Gene Shew185_3400 details

Gene Information

• Locus tag: Shew185_3400
• Symbol: carB
• ID: 5373692
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: -
• Start bp: 4035941
• End bp: 4039165
• Gene Length: 3225 bp
• Protein Length: 1074 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640831660
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_001367590
• Protein GI: 153001909
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG0439] Biotin carboxylase; [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAC GTACAGATAT AAAGAGTATT CTTATCCTAG GCGCCGGCCC AATCGTGATT 
GGCCAGGCAT GTGAATTTGA CTATTCTGGC GCACAGGCGT GTAAAGCGCT GCGTGAAGAA 
GGCTACCGTG TCATTCTGGT GAACTCTAAC CCTGCCACCA TTATGACTGA CCCAGAAATG 
GCCGATGCTA CTTATATCGA GCCGATTCAC TGGGAAGTGG TCCGTAACAT TATTGCTAAA 
GAACGCCCAG ACGCGATTCT GCCAACCATG GGCGGCCAAA CCGCACTGAA CTGCGCATTA 
GAACTTGAAG CTAAAGGCGT ACTGAAAGAA TTTAACGTCG AGATGATTGG CGCGACCGCC 
GATGCCATCG ATAAAGCAGA AGACCGTAGC CGCTTTGATA AAGCGATGAA AAGTATCGGT 
CTTGACTGTC CACGTGCGGG CATTGCCCAC AACATGGAAG AAGCTTACGG CGTACTCGAT 
CAAGTGGGTT TCCCTTGTAT TATCCGTCCA TCCTTTACTA TGGGTGGCTC GGGCGGCGGT 
ATCGCCTACA ACAAGGAAGA GTTCGAAGAG ATCTGTTCAC AGGGCTTAGA GTTATCGCCA 
ACGAGTGAAC TGCTGATCGA CGAATCACTG ATCGGTTGGA AAGAATACGA GATGGAAGTG 
GTCCGTGACC GCAACGATAA CTGCATTATC GTCTGCGCCA TCGAAAACTT CGATCCTATG 
GGCGTGCACA CTGGCGACTC TATTACCGTT GCGCCAGCGC AAACTCTGAC TGACAAAGAA 
TACCAAATCA TGCGTAACGC CTCTATGGCC GTACTGCGTG AAATTGGTGT AGAGACCGGC 
GGTTCGAACG TACAGTTTGG TATCAACCCG AAAGATGGCC GTATGGTTAT CATCGAGATG 
AACCCACGTG TATCGCGCTC TTCAGCATTG GCATCAAAGG CAACGGGTTT CCCGATTGCG 
AAAATCGCCG CTAAGTTAGC GGTCGGTTTT ACCCTTGATG AGCTGATGAA CGACATCACT 
GGCGGTCGTA CGCCAGCTTC ATTCGAGCCA GCTATCGATT ACGTTGTGAC TAAAGTGCCA 
CGCTTTAACT TTGAAAAGTT TGCTGGCGCC AATGATCGCT TAACCACACA GATGAAGTCT 
GTGGGTGAAG TGATGGCGAT TGGCCGTACT TTCCAAGAGT CACTGCAAAA AGCTTTACGT 
GGTTTAGAGG TTAGCCGTAA CGGTTTAGAC CCTATCACTG ATATGGCAAA ACCTGAGGCA 
ATGCAACGTA TTCGCCATGA GCTGAAAGAG CCAGGTTGCG ACCGTATTTG GTACATAGCC 
GATGCGATGC GTGCGGGGCT GAGCTTAGAT GAAATCTTTA AGCTGACCAA TATCGACCCT 
TGGTTCCTCG TACAAATCGA AGAGCTGGTT CAGCTTGAAG GCGTAGTAGC TGACTCGGGT 
CTGGCGGGTC TGGATATCGA CTTACTGCGC AAACTGAAAC GTAAAGGTTT TGCTGATGCG 
CGTCTGGCCG ATGTATTAGG CGTGAACGAA GCCGAAGTGC GTAAGCTGCG TGATAAGTTC 
GACCTGCACC CAGTCTACAA GCGTGTGGAT ACTTGTGCGG CTGAGTTTGC AACAGACACA 
GCTTACATGT ACTCAACGTA CGAAGAAGAA TGTGAAGCTA ACCCATCGAC CCGTGACAAA 
ATCATGGTGT TAGGTGGCGG GCCAAACCGT ATCGGTCAAG GTATCGAGTT CGATTATTGC 
TGTGTGCACG CGGCGTTAGC GCTACGTGAA GACGGTTATG AAACCATCAT GGTGAACTGT 
AACCCTGAAA CCGTTTCAAC CGACTACGAC ACTTCAGACC GTCTGTACTT CGAACCCGTC 
ACACTGGAAG ACGTATTAGA AATCGTCCGT ATCGAGAAGC CAAAAGGCGT TATCGTGCAG 
TACGGTGGTC AAACGCCATT GAAATTGGCC CGTGCCTTAG AAGCTGCTGG CGTACCTGTC 
ATTGGTACTA GCCCAGATGC CATCGACCGC GCCGAAGACC GTGAGCGTTT CCAGCAAGCG 
ATTCAGCGCT TAGAGATGAA GCAGCCTGAA AATGATACCG TGACTACGGT TGAAGGTGCT 
GTGATTGCCG CTGAGCGTAT CGGTTATCCG TTAGTTGTGC GTCCATCCTA TGTACTGGGC 
GGCCGCGCGA TGGAAATCGT CTACGACAAG CAAGATTTGC TGCGTTACTT CAACGAAGCC 
GTGAGCGTAT CGAATGCGTC GCCAGTACTG CTCGATCGCT TCTTAGATGA TGCGATTGAA 
GTGGATATTG ATGCAGTATG TGACGGTGAA ATCGTGGTAA TTGGCGCGAT TATGGAGCAT 
ATCGAACAAG CGGGTGTTCA CTCAGGTGAC TCAGGTTGTT CGCTGCCGCC ATACACGCTA 
AGCCAAGAAA TCCAAGATCG CATGCGCGTT CAAGTCGGCA AGTTGGCGAT GGAACTCGGT 
GTTGTCGGCC TGATGAACGT ACAGTTTGCC GTGAAAGATA ACGAAATCTA TATGATTGAA 
GTTAACCCAC GTGCTGCCCG TACTGTGCCA TTTGTGTCTA AAGCAACGGG TGTGCCTTTA 
GCTAAGATTG CCGCGCGTGT GATGGCGGGT CAAAGCTTAA CGTCGCAAAA CTTCACTAAA 
GAAGTGATCC CACCTTTCTA CTCAGTGAAA GAAGTGGTAT TGCCATTTAA CAAGTTCCCG 
GGTGTTGACC CACTGTTAGG CCCAGAAATG CGCTCTACCG GTGAAGTCAT GGGCGTGGGC 
GATACGTTCG CCGAAGCCTA TGCCAAGGCG CAGTTAGGGG CCACTTCTGA AGTGCCTAAG 
TCGGGTCGTG CATTATTGTC TGTGCGTAAC AGCGATAAGA AACGCGTTGC CGATTTAGCG 
GCTAAGTTAA TCGAGCTCGG TTACCAAATC GATGCCACTC ACGGTACTGC GATTATCCTT 
GGCGAAGCGG GTATCAACCC ACGTCTAGTG AACAAGGTAC ACGAAGGTCG TCCACACATT 
CTCGATCGCA TCAAGAATGG TGAATACACT TATATCGTGA ACACTACCGA AGGTCGCCAA 
GCGATTGAAG ATTCTCGTCA ATTGCGCCGC GGTGCACTGC GTTACAAAGT TAACTACACC 
ACGACCATGA ATGCTGCATT CGCCACGTGT ATGGCCCATG CCGCTGATGA TCGTACTAAT 
GTGACGTCAG TACAAGAACT GCATCTGCGC GTACTGGCTA AATAA 

 

Protein sequence

MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM 
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELEAKGVLKE FNVEMIGATA 
DAIDKAEDRS RFDKAMKSIG LDCPRAGIAH NMEEAYGVLD QVGFPCIIRP SFTMGGSGGG 
IAYNKEEFEE ICSQGLELSP TSELLIDESL IGWKEYEMEV VRDRNDNCII VCAIENFDPM 
GVHTGDSITV APAQTLTDKE YQIMRNASMA VLREIGVETG GSNVQFGINP KDGRMVIIEM 
NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELMNDIT GGRTPASFEP AIDYVVTKVP 
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVSRNGLD PITDMAKPEA 
MQRIRHELKE PGCDRIWYIA DAMRAGLSLD EIFKLTNIDP WFLVQIEELV QLEGVVADSG 
LAGLDIDLLR KLKRKGFADA RLADVLGVNE AEVRKLRDKF DLHPVYKRVD TCAAEFATDT 
AYMYSTYEEE CEANPSTRDK IMVLGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC 
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RALEAAGVPV 
IGTSPDAIDR AEDRERFQQA IQRLEMKQPE NDTVTTVEGA VIAAERIGYP LVVRPSYVLG 
GRAMEIVYDK QDLLRYFNEA VSVSNASPVL LDRFLDDAIE VDIDAVCDGE IVVIGAIMEH 
IEQAGVHSGD SGCSLPPYTL SQEIQDRMRV QVGKLAMELG VVGLMNVQFA VKDNEIYMIE 
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLTSQNFTK EVIPPFYSVK EVVLPFNKFP 
GVDPLLGPEM RSTGEVMGVG DTFAEAYAKA QLGATSEVPK SGRALLSVRN SDKKRVADLA 
AKLIELGYQI DATHGTAIIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTTEGRQ 
AIEDSRQLRR GALRYKVNYT TTMNAAFATC MAHAADDRTN VTSVQELHLR VLAK