Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3074 |
Symbol | carB |
ID | 5663464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 3769661 |
End bp | 3772882 |
Gene Length | 3222 bp |
Protein Length | 1073 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641237715 |
Product | carbamoyl phosphate synthase large subunit |
Protein accession | YP_001502926 |
Protein GI | 157962892 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.581012 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAAC GTACAGATAT AAAGAGTATT CTTATCCTAG GTGCTGGACC GATTGTAATT GGTCAAGCCT GTGAGTTTGA CTACTCAGGC GCCCAAGCCT GTAAAGCCCT ACGCGAAGAA GGCTACCGAG TTATTCTTGT TAACTCAAAC CCTGCAACCA TTATGACTGA CCCAGAGATG GCCGATGCGA CTTACATCGA ACCTATTCAC TGGGAAGTAG TACGTAACAT TATTGCCAAA GAGCGTCCTG ATGCGATTTT GCCAACCATG GGCGGCCAAA CAGCACTTAA CTGTGCGCTT GAGCTTGAAA GCCGTGGTGT ACTAAAAGAA TTCAATGTTG AAATGATTGG CGCAACAGCC GATGCAATCG ACAAAGCTGA GGACCGTAGC CGTTTCGATA AGGCAATGAA GTCGATTGGC CTTGAGTGTC CTCGTGCTGG TATCGCGCAC AACATGGATG AAGCCCGCGC TGTTCAAGCA GAAGTTGGCT ACCCGTGTAT TATCCGTCCG TCATTCACTA TGGGTGGCAG CGGCGGTGGT ATCGCTTATA ACAAAGAAGA GTTTGAGGAT ATCTGTTCTC AAGGTCTTGA GCTATCACCC ACTAGCGAAC TGCTTATCGA CGAATCTTTG ATTGGTTGGA AAGAGTACGA GATGGAAGTG GTACGTGACC GCAACGATAA CTGTATTATC GTCTGTGCAA TCGAAAACTT TGACCCAATG GGCGTTCACA CTGGTGACTC AATTACGGTT GCACCAGCAC AAACCCTAAC TGACAAAGAA TACCAATTGA TGCGTAATGC ATCACTTGCA GTATTGCGTG AGATTGGTGT TGAAACTGGC GGTTCAAACG TACAGTTTGG TATTAATCCT GTTGATGGCC GTATGGTTAT CATCGAGATG AACCCTCGTG TATCACGTTC TTCTGCACTA GCATCGAAAG CAACCGGTTT CCCGATTGCA AAGATTGCAG CCAAGCTAGC GGTTGGCTTC ACTCTCGATG AGCTTAGCAA CGACATTACC GGCGGTGCAA CTCCAGCATC ATTTGAGCCT GCAATCGATT ACGTTGTAAC TAAAATCCCG CGTTTTAACT TTGAAAAGTT TGCTGGTGCT AATGACCGTC TAACTACACA GATGAAGTCT GTGGGTGAAG TGATGGCGAT TGGCCGTACA TTCCAAGAGT CACTACAAAA AGCCCTTCGT GGACTTGAAG TGGGTAAAAA TGGTTTATGC CCAGAAATCG ACTTGGCAGA ACCAGAAGCA TTATCACGTA TTCGTCACGA GCTTAAAGAG CCGGGCGCAG AACGTATTTG GTATATTGCT GATGCATTCC GTGCGGGTCT GTCGGTTGAT GATATCTTTG GCTTAACTAA TATTGACCCT TGGTTCCTTG TGCAGCTTGA AGACTTGCTT AAGTCTGAAG CGCAAGTCGC TGAAATCGGT CTTGCTGGAT TAAGTGAAGA CGTTCTACGC AAGCTTAAGC GCAAAGGTTT TGCCGATTCT CGTTTAGCTG CACTAGCTGG TGTGAGCGAG ACTGAAGTGC GTAAGCTGCG TACTCGTTTT GAAATTCACC CAGTGTATAA GCGTGTTGAT ACCTGCGCGG CTGAATTCTC AACAGATACG GCTTACATGT ACTCAACTTA TGAAGATGAG TGTGAAGCGA ATCCATCAAA TCGTGACAAG ATCATGATTT TAGGTGGTGG TCCAAACCGT ATTGGCCAAG GTATTGAGTT TGATTACTGT TGTGTACATG CAGCATTGGC GCTACGTGAA GACGGGTACG AGACCATCAT GGTTAACTGT AACCCTGAAA CCGTTTCTAC CGACTACGAC ACATCAGATC GTCTGTACTT CGAGTCAGTA ACTTTTGAAG ATGTGCTTGA AATCGTACGT ATCGAAAAGC CAAAAGGCGT TATCGTGCAG TACGGTGGTC AAACACCGCT TAAACTAGCA CGCGACCTTG AAGCCGCTGG CGTACCAATT ATTGGTACTA GCCCTGATGC AATTGACCGT GCTGAAGACC GTGAGCGTTT CCAGCAAGCA ATTCAGCGTT TAGGCATGAT GCAGCCAGAA AATGATACGG TAACAACCGT AGAAGGCGCA GTGATCTCAG CTGAGCGTAT TGGTTATCCG TTAGTGGTTC GTCCATCTTA TGTTTTAGGT GGCCGTGCAA TGGAAATCGT TTATGACGAG CAAGATTTAC GTCGCTACTT TAATGAAGCG GTAAGTGTTT CTAACGCGTC TCCAGTGCTA CTTGACCGTT TCCTAGACAA CGCAATCGAA ATCGACATCG ACGCAGTATG TGATGGCGAA ACGGTTGTGA TTGGCTCAAT CATGGAACAT ATCGAGCAAG CGGGTGTTCA CTCTGGTGAC TCTGGTTGTT CATTGCCTCC ATATAGCCTA AGCCAAGACA TTCAAGACCG CATGCGTGAG CAGGTGGGTA AGCTTGCAAT GGAGCTAGGC GTAATTGGTC TGATGAACGT ACAGTTTGCA GTGAAGGATA ACGAGATCTA CATGATCGAA GTTAACCCAC GTGCAGCGCG TACCGTACCA TTTGTATCGA AGGCGACTGG CGTTCCATTA GCTAAGATTG CCGCGCGTGT GATGGCGGGT CAAAGCCTTA AATCACAGAA CTTCACCGAA GAAGTTATTC CGCCATTCTA CTCTGTAAAA GAAGTGGTAT TGCCGTTTAA CAAGTTCCCA GGTGTTGACC CATTGCTTGG CCCTGAGATG CGATCAACGG GTGAGGTTAT GGGTGTGGGT GATACGTTTG CTGAAGCCTA TGCTAAAGCG CAGTTAGGTG CGACATCTGA AGTGCCTAAG TCTGGCCGTG CACTCTTGTC TGTTCGTAAC AGCGATAAGG CTCGTGTTGC CGATTTAGCC GCGCAATTAA TTGCATTGGG TTATCAGATT GACGCAACAC ACGGTACTGC GGTTATCTTA GGCGAAGCGG GTATTAACCC ACGTCTAGTG AACAAGGTAC ACGAAGGTCG TCCTCATATT CTTGACCGTA TCAAGAACGG TGAGTACACC TATATCGTTA ACACGACAGA AGGTCGTAAG GCGATTGAAG ATTCACGTCA GCTACGTCGT GGTGCACTGC GTTACAAGGT GAACTACACA ACGACTTTGA ATGCTGCCTT TGCAACTTGT ATGGCTCACT CGGCGGATGA CCGCTCGAAC GTGACGTCAG TACAAGAGCT GCATAAGCGT ATTACTAAGT AA
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Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELESRGVLKE FNVEMIGATA DAIDKAEDRS RFDKAMKSIG LECPRAGIAH NMDEARAVQA EVGYPCIIRP SFTMGGSGGG IAYNKEEFED ICSQGLELSP TSELLIDESL IGWKEYEMEV VRDRNDNCII VCAIENFDPM GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP VDGRMVIIEM NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELSNDIT GGATPASFEP AIDYVVTKIP RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVGKNGLC PEIDLAEPEA LSRIRHELKE PGAERIWYIA DAFRAGLSVD DIFGLTNIDP WFLVQLEDLL KSEAQVAEIG LAGLSEDVLR KLKRKGFADS RLAALAGVSE TEVRKLRTRF EIHPVYKRVD TCAAEFSTDT AYMYSTYEDE CEANPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC NPETVSTDYD TSDRLYFESV TFEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RDLEAAGVPI IGTSPDAIDR AEDRERFQQA IQRLGMMQPE NDTVTTVEGA VISAERIGYP LVVRPSYVLG GRAMEIVYDE QDLRRYFNEA VSVSNASPVL LDRFLDNAIE IDIDAVCDGE TVVIGSIMEH IEQAGVHSGD SGCSLPPYSL SQDIQDRMRE QVGKLAMELG VIGLMNVQFA VKDNEIYMIE VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKSQNFTE EVIPPFYSVK EVVLPFNKFP GVDPLLGPEM RSTGEVMGVG DTFAEAYAKA QLGATSEVPK SGRALLSVRN SDKARVADLA AQLIALGYQI DATHGTAVIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTTEGRK AIEDSRQLRR GALRYKVNYT TTLNAAFATC MAHSADDRSN VTSVQELHKR ITK
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