| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2838 |
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| Symbol | carB |
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| ID | 4922345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3362872 |
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| End bp | 3366093 |
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| Gene Length | 3222 bp |
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| Protein Length | 1073 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164435 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001094963 |
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| Protein GI | 127513766 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.144627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.047859 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGACAT AAAAAGTATT CTTATCCTGG GTGCTGGCCC GATTGTTATC
GGTCAGGCAT GTGAGTTTGA CTACTCTGGT GCCCAGGCGT GTAAGGCGCT TCGTGAAGAG
GGTTACCGGG TTATTCTGGT GAACTCTAAC CCAGCGACCA TCATGACAGA CCCAGAGATG
GCCGATGCGA CCTACATAGA GCCTATCCAC TGGGAAGTGG TGCGCAACAT CATCGCTAAG
GAACGTCCCG ATGCGATTCT GCCGACCATG GGCGGTCAGA CTGCACTGAA CTGTGCCCTG
CGCCTGGAGG CAGAAGGTGT GCTGGCCGAA TTTAACGTCG ACATGATCGG CGCGACGGCC
GATGCCATCG ACAAGGCCGA AGACCGTAGC CGTTTCGATG CGGCGATGAA GAAGATTGGT
CTCGAGTGTC CTCGCGCCGG TATCGCCCGC AGCATGGAAG ATGCCTACGA GGTACTTGAG
CAGGTTGGTT TCCCTTGTAT TATCCGTCCA TCATTCACCA TGGGTGGCTC GGGCGGTGGT
ATCGCCTACA ACAAGGAGGA GTTCGAGGAG ATCTGTTCTC AGGGTCTCGA GCTGTCACCG
ACCAACGAAC TGCTGATCGA TGAGTCGCTC ATCGGTTGGA AAGAATATGA GATGGAAGTG
GTTCGTGACC GCAACGATAA CAGTATTATC GTCTGCTCTA TCGAAAACTT CGATCCTATG
GGCGTGCACA CCGGCGACTC AATCACAGTC GCACCGGCGC AGACCCTGAC AGACAAAGAA
TATCAGCTGA TGCGTAACGC TTCACTGGCG GTACTGCGTG AGATCGGCGT GGAAACCGGT
GGTTCAAACG TTCAGTTCGG TATCAACCCG AAAGATGGCC GTATGGTGAT CATCGAGATG
AACCCGCGTG TATCGCGTTC ATCTGCCCTG GCGTCTAAGG CAACAGGTTT CCCTATCGCC
AAGATCGCCG CCAAGCTGGC GGTGGGCTTC ACCCTGGATG AGCTGAGCAA CGACATCACT
GGCGGTGCCA CCCCAGCCTC GTTCGAGCCT GCCATCGACT ATGTGGTTAC CAAGGTGCCA
CGCTTCAACT TCGAGAAATT TGCCGGCGCA AATGACCGTC TGACCACTCA GATGAAGTCT
GTGGGCGAGG TAATGGCGAT TGGTCGTACC TTCCAAGAGT CGCTGCAAAA AGCACTGCGC
GGCCTCGAGG TCGGCGTTAA TGGCCTGGAT CCTATCGTCG ATGTAGAGGA TAACGATGCC
CTGTCGCGCA TTCGCCACGA GCTGAAAGAG CCAGGCGCCG AGCGTATCTG GTATATCGCC
GATGCCTTTC GCGCCGGTCT GAGTCTGGAT GCCATTTTCA AGCTGACCAA TATCGACCCT
TGGTTCCTGG TGCAGATTGA AGAGCTGCTA TCACTTGAGA ACCAAGTGAA AGAAGCTGGC
ATGGCTAGCA TGGACAAAGA TTTCCTTTAC AAGCTCAAGC GTAAAGGTTT CTCCGATGCG
CGTCTGGCGG CCCTGATGGG GGTCAGCGAG TCTGAGATGC GTAAGCTGCG TTACCGTCAC
GAAGTGTACC CTGTGTACAA GCGCGTCGAT ACCTGCGCCG CCGAGTTCTC GACTGACACC
GCCTACATGT ACTCGACCTA TGAGGAAGAG TGTGAGGCTA ACCCATCTAA CCGCGATAAG
ATCATGGTGC TGGGTGGTGG TCCTAACCGT ATCGGCCAGG GTATCGAATT CGATTACTGC
TGTGTGCACG CGGCGCTTGC CCTGCGTGAA GATGGTTACG AGACCATCAT GGTCAACTGT
AACCCAGAGA CAGTCTCTAC CGACTACGAT ACTTCTGACA GACTCTATTT CGAATCTGTG
ACTCTGGAAG ATGTGCTGGA GATCGTCCGC ATCGAGCAGC CTAAAGGGGT TATCGTGCAG
TACGGTGGTC AGACGCCGCT GAAACTGGCT CGTGACCTGG AAGCCGCCGG TGTGCCTATT
ATCGGTACCA GCCCGGATGC CATTGACCGC GCCGAAGACC GTGAGCGTTT CCAGCAGGCG
ATTCAACGCC TGGAGATGAA GCAGCCGGAA AACGATACCG TGACTACGGT AGAAGGTGCC
GTTATTTCCG CCGAGCGTAT CGGTTACCCG CTAGTGGTAC GTCCATCCTA CGTACTGGGT
GGCCGAGCCA TGGAGATCGT TTACGACGAG CAAGACCTGC GTCGTTACTT TAACGAAGCG
GTTAGCGTCT CTAACGCCTC GCCAGTGCTG CTGGATCACT TCCTCGATAA CGCCACCGAG
GTGGATATCG ATGCGGTATG TGATGGCACG ACTGTTGTGG TTGGCGCCAT CATGGAGCAT
ATCGAGCAGG CGGGTGTTCA CTCGGGTGAC TCGGGTTGTT CGCTGCCTCC CTACACACTG
AGCCAGGAGA TCCAGGATCA GATGCGCGAA CAGGTGCGCA AGCTGGCGAT GGAACTCGGC
GTTGTGGGTC TGATGAACGT GCAGTTCGCG GTACAAGACA ACACCATCTA CATGATCGAG
GTTAACCCGC GTGCGGCCCG TACCGTACCA TTCGTCTCTA AGGCGACGGG TGTACCGCTA
GCTAAGATCG CCGCGCGCGT CATGGCCGGT CAGAGTCTGG AGGAGCAGGG CTTTACCAAA
GAGGTAATTC CACCTTTCTA CTCGGTGAAA GAAGTGGTAC TGCCATTTAA CAAGTTCCCG
GGTGTTGACC CGCTACTTGG CCCTGAGATG CGCTCTACCG GTGAGGTAAT GGGCGTGGGT
GCAACCTTCG CCGAGGCCTA TGCTAAGGCT GAGCTGGGTG CCACCTCTGA GGTGCCTAAG
TCTGGCCGTG CGCTGCTTTC TGTACGTAAC AGCGACAAGA AGCGTGTTGC CGACCTGGCC
GCCAAGCTGA TTGAGCTGGG CTATGAGATC GATGCTACCC ATGGCACCGC AGTCGTGCTG
GGCGAGGCGG GTATCAATCC TCGTTTGGTG AACAAGGTAC ACGAAGGGCG TCCGCATATT
CTTGACCGTA TCAAGAACGA CGAGTACACC TATATCGTGA ACACTACCGA AGGCCGTCAG
GCGATCGAAG ACTCACGTCA GCTGCGTCGT GGCGCGCTGC GTTACAAGGT GAACTACACT
ACAACTTTGA ACGCCGCCTT CGCGACCTGT ATGGCGCACT CTGCCGACAG TCGCACCAAT
GTGACCTCAG TGCAGGAGCT GCACCAGCGC ATTAAGGGCT AA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL RLEAEGVLAE FNVDMIGATA
DAIDKAEDRS RFDAAMKKIG LECPRAGIAR SMEDAYEVLE QVGFPCIIRP SFTMGGSGGG
IAYNKEEFEE ICSQGLELSP TNELLIDESL IGWKEYEMEV VRDRNDNSII VCSIENFDPM
GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP KDGRMVIIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELSNDIT GGATPASFEP AIDYVVTKVP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVGVNGLD PIVDVEDNDA
LSRIRHELKE PGAERIWYIA DAFRAGLSLD AIFKLTNIDP WFLVQIEELL SLENQVKEAG
MASMDKDFLY KLKRKGFSDA RLAALMGVSE SEMRKLRYRH EVYPVYKRVD TCAAEFSTDT
AYMYSTYEEE CEANPSNRDK IMVLGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFESV TLEDVLEIVR IEQPKGVIVQ YGGQTPLKLA RDLEAAGVPI
IGTSPDAIDR AEDRERFQQA IQRLEMKQPE NDTVTTVEGA VISAERIGYP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNASPVL LDHFLDNATE VDIDAVCDGT TVVVGAIMEH
IEQAGVHSGD SGCSLPPYTL SQEIQDQMRE QVRKLAMELG VVGLMNVQFA VQDNTIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLEEQGFTK EVIPPFYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG ATFAEAYAKA ELGATSEVPK SGRALLSVRN SDKKRVADLA
AKLIELGYEI DATHGTAVVL GEAGINPRLV NKVHEGRPHI LDRIKNDEYT YIVNTTEGRQ
AIEDSRQLRR GALRYKVNYT TTLNAAFATC MAHSADSRTN VTSVQELHQR IKG
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