| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0917 |
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| Symbol | carB |
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| ID | 8709960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1047083 |
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| End bp | 1050478 |
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| Gene Length | 3396 bp |
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| Protein Length | 1131 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483015 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_003374131 |
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| Protein GI | 283783377 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACTGATAT TAAGTCGGTT ATGGTAATTG GTTCCGGCCC GATTGTTATT
GGTCAGGCTG CAGAGTTTGA TTATTCCGGA ACGCAGGCTT GCCGAGTTCT TCGCGAAGAA
GGCATTCGCG TAATTTTGGT CAACTCTAAC CCGGCTACGA TTATGACCGA CCCGGAACTT
GCGGACGCAA CATATATTGA GCCAATTGAC ACTTCGATTT TGGAGCGAAT TATTGCAAAG
GAGCGTCCGG ATGCGCTTCT TCCAACGCTT GGTGGTCAAA CTGCACTTAA TGCTGCAATG
GATTTGGGTC GTGCAGGAAT CCTAGAAAAA TATAACGTTG AGCTTATTGG CGCTTCTTTG
GAAGCAATCG ACCGTGGCGA AGACCGAGAG CTTTTCAAAA AAGTCGTTGA AAAAGCCGGA
GCTGAGTCAG CAAAATCCTT TATTGCTCAC TCGATTGAAG AAGTAGACAA AATTGTTGAA
ACTTTAGGAT ACCCGGTAGT AGTACGTCCA AGCTTCACAA TGGGCGGCTT GGGCTCTGGT
ATTGCTCATA ACGAAGAAGA GCTTCACCGC ATTGCAGGAG CCGGCATTCA CTATTCTCCA
ACAAACGAAG TGCTTATTGA AGAAGGCATT GAAGGCTGGA AAGAGTTTGA GCTTGAACTT
ATGCGCGACG CAAAAGATAA CGTCGTAGTT GTTTGCCCAA TCGAAAACGT CGATCCTGTA
GGCGTGCACA CTGGCGACTC GATTACAGTA GCTCCTTGCT TTACGCTTAC AGACCGCGAG
TATCAGAAGA TGCGCGATAT TGGTATCGCT ATTATTCGAG GCGTTGGCGT TGACACCGGT
GGTTGCAATA TTCAGTTCGC AATCAACCCT CAAACTGGTC GCATTATCGT CATCGAAATG
AACCCGCGTG TGTCTCGTTC TTCCGCGCTC GCATCTAAAG CAACTGGCTT CCCAATCGCA
AAAATCGCAA CGAAACTTGC TCTCGGCTAC ACTTTGGATG AAATTCAAAA CGATATTACG
CGTTCAACTC CTGCAAGCTT CGAGCCAACA ATCGACTATG TTGTAACGAA GATTCCGCGC
TTTGCTTTCG AAAAGTTCCC AGGAGCAGAC ACCACGCTTA CAACTTCTAT GAAGTCAGTT
GGCGAAGCAA TGGCTTTGGC TGGAAACTTC CAGGAATCCC TTGGAAAAGC AATGCGCTCA
ATCGACAAGC GTCACGCGTG CTTTAGCTGG GATGGCGAGC GTCCAAGCAA GGAAGAAGTT
AATAAGCTTC TTGAAGAAAT GCACACTCCA ACGGAGCACC GCTACTTGCA AATTCAGCGC
GCGCTTTGGG GTGGAGCTAC GCCGGAGCAG ATTTTTGCAG CAACAAAAAT CGACCCTTGG
TTTGTAGAGC AGCTGGCTCA AATTAACGAA ACTGCGCTCG CGGTTCGTGA AGCTGAAACT
TTAACTCCTA AAGTTTTGAA GCGTGCTAAG CTTGCTGGTC TTTCGGACGT GCAGATTGCG
CATTTGCGTA ATCTTGGCGA CGAAGGCGAA AACATGGTTC GTGAGCTTCG TTGGGCTTAC
GGTTTGCGCC CTGTTTACAA GACTGTTGAC ACTTGCGCAG CTGAGTTCGA CGCAGCAACT
CCGTACTACT ATTCTTGCTA CGCTGACGAA AGCGAGTTGA AGAAGCGCGA TCGCGAAGCT
GTGATTATCC TTGGCTCTGG TCCAAACAGA ATCGGCCAGG GTATTGAGTT TGATTACACT
TGCGTTCACG CTGTTCAGGA ATTGGGCAAG GATTACGACA CCATTATGGT TAATTGCAAT
CCTGAAACAG TTTCTACAGA TTACGACATG TCTGACCGCC TTTACTTTGA GCCTCTTACT
TTCGAAGATG TGCTTGAAAT TTACGAAGCA GAAAAGAAGC TTGGACCTGT TAAGGGCGTG
ATTGTGCAGC TTGGTGGCCA AACGCCACTT TCGCTTGCTG CTCGTCTTAA AGCTGCAGGA
GTTCCAATTT TGGGAACGAC TCCTGAGGCT ATTGATTTGG CTGAAAACCG TGAGCTTTTC
GGCGAGGTTC TTCGTCAAGA AGGCATGAAC GCTCCTCGAT ACGGTACAGC TTTAAGCCTT
GAGGAAGCAA AAGATGCAGC TCACGCAATC GGCTACCCGG TTCTTGTGCG TCCAAGCTAC
GTACTCGGCG GTCGCGGAAT GGAGATTGTG TACGACGACG CTCAGCTTGC AAAGTATGTT
GATCGCGCAT TGGATGAAGC TCGAGCAGAC ACTGTTGTTT CTGGCCGCTT GCCTTCGCCG
CTTTTGATTG ATAAGTTCCT TCAGGACGCT ATTGAAATTG ATGTTGACGC GCTTTACGAC
GGCAACGAGC TTTATATTGG CGGCATTATG GAGCATGTTG AGGAAGCTGG CGTGCACTCT
GGTGACGCTG CTTGTACTCT TCCTCCAAGC ACGCTTTCGG ACGATCAAAT TCGCCGCCTT
CGCGAAGGCA CGCTTTCGAT TGCGCGCGGC TGCTCAGTTC GCGGTCTGAT TAACGTGCAG
TACGCTTTTA TGGCAAACAC TTTGTATGTA ATTGAAGCAA ATCCTCGAGC GTCTCGTACT
GTTCCGTTTG CTTCTAAAGC TACTGGTGTT GCTCTTGCTA AAGCTGCTGC TCGAATTATG
GCTGGTGAAA CAATTGCACA GCAGCGCAAG CGTGGACTTC TTCTTCCGCA AGGCGATGGT
GGTGATATTC ATCCAGGTCA GCAAGTTGCT ATTAAAGCTT CTGTGCTGCC GTTCAAGCGT
TTCCGCACTC CTGTTGGTCG TACGGTTGAT ATTTTGCTCG GACCAGAAAT GCGTTCTACC
GGCGAAGTTA TGGGCTTCGA TCGTGACTTC CCACATGCTT TTGCTAAGAG CCAGCTTGCA
GCATACAAGG GTGGTTTGCC TACCAGCGGC AACGTGTTTG TGTCTGTAAG TGATGCAGAT
AAGCGTCAAC TTCCGCTTCT TGCAGTGCGA TTAGTGGAGC TTGGTTTTAC GATTTGGGCT
ACTGAAGGTA CAGCTTCTGT GCTTCGTCGT TATGGTATTG ATTCCGTGAT TGTCGATAAG
CTTTCTAGTC AGGGCGACAC GGCGAAGGAT ATGCCAAATA GTGAGAAAGC GCATGAAAGA
ATCGGTAAGA ATGTTGTAGA GCTTATCGAA AATGGTAAGA TTGATATGGT ATTGAATACG
CCGAATTCAA GGGGATCGCG CACTGATGGT TATGCCATTC GTGCAGCAGC TGTAGCAGCT
GATCTTCCGC AATTCACTAC TATTACCGAA TTCGCACCAG TATTAATGGC TATTGAAGCT
GTTAAGAACA ACGATTATCA GGTGATGAGC ATACAAGAAC ATGCTCAGCA GTTGTTTGCA
ATTGAACAGG CAGAAAGTCA AGAAAGTCGG GCTTAA
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| Protein sequence | MPKRTDIKSV MVIGSGPIVI GQAAEFDYSG TQACRVLREE GIRVILVNSN PATIMTDPEL
ADATYIEPID TSILERIIAK ERPDALLPTL GGQTALNAAM DLGRAGILEK YNVELIGASL
EAIDRGEDRE LFKKVVEKAG AESAKSFIAH SIEEVDKIVE TLGYPVVVRP SFTMGGLGSG
IAHNEEELHR IAGAGIHYSP TNEVLIEEGI EGWKEFELEL MRDAKDNVVV VCPIENVDPV
GVHTGDSITV APCFTLTDRE YQKMRDIGIA IIRGVGVDTG GCNIQFAINP QTGRIIVIEM
NPRVSRSSAL ASKATGFPIA KIATKLALGY TLDEIQNDIT RSTPASFEPT IDYVVTKIPR
FAFEKFPGAD TTLTTSMKSV GEAMALAGNF QESLGKAMRS IDKRHACFSW DGERPSKEEV
NKLLEEMHTP TEHRYLQIQR ALWGGATPEQ IFAATKIDPW FVEQLAQINE TALAVREAET
LTPKVLKRAK LAGLSDVQIA HLRNLGDEGE NMVRELRWAY GLRPVYKTVD TCAAEFDAAT
PYYYSCYADE SELKKRDREA VIILGSGPNR IGQGIEFDYT CVHAVQELGK DYDTIMVNCN
PETVSTDYDM SDRLYFEPLT FEDVLEIYEA EKKLGPVKGV IVQLGGQTPL SLAARLKAAG
VPILGTTPEA IDLAENRELF GEVLRQEGMN APRYGTALSL EEAKDAAHAI GYPVLVRPSY
VLGGRGMEIV YDDAQLAKYV DRALDEARAD TVVSGRLPSP LLIDKFLQDA IEIDVDALYD
GNELYIGGIM EHVEEAGVHS GDAACTLPPS TLSDDQIRRL REGTLSIARG CSVRGLINVQ
YAFMANTLYV IEANPRASRT VPFASKATGV ALAKAAARIM AGETIAQQRK RGLLLPQGDG
GDIHPGQQVA IKASVLPFKR FRTPVGRTVD ILLGPEMRST GEVMGFDRDF PHAFAKSQLA
AYKGGLPTSG NVFVSVSDAD KRQLPLLAVR LVELGFTIWA TEGTASVLRR YGIDSVIVDK
LSSQGDTAKD MPNSEKAHER IGKNVVELIE NGKIDMVLNT PNSRGSRTDG YAIRAAAVAA
DLPQFTTITE FAPVLMAIEA VKNNDYQVMS IQEHAQQLFA IEQAESQESR A
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