More than 300 homologs were found in PanDaTox collection
for query gene Smal_3505 on replicon NC_011071
Organism: Stenotrophomonas maltophilia R551-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
448 aa  896    Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  54.15 
 
 
478 aa  489  1e-137  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  53.07 
 
 
484 aa  485  1e-136  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  53.28 
 
 
484 aa  486  1e-136  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  52.73 
 
 
494 aa  482  1e-135  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  53.65 
 
 
475 aa  483  1e-135  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  52.33 
 
 
493 aa  480  1e-134  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  51.49 
 
 
503 aa  476  1e-133  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  51.2 
 
 
502 aa  477  1e-133  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  51.2 
 
 
502 aa  473  1e-132  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  53.09 
 
 
504 aa  472  1e-132  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  52.25 
 
 
482 aa  472  1e-132  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  50.7 
 
 
499 aa  470  1.0000000000000001e-131  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  50.62 
 
 
485 aa  465  9.999999999999999e-131  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  49.7 
 
 
496 aa  455  1e-127  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  49.02 
 
 
509 aa  452  1.0000000000000001e-126  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  49.89 
 
 
435 aa  412  1e-114  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  42.26 
 
 
471 aa  325  1e-87  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  39.39 
 
 
466 aa  321  9.999999999999999e-87  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  41.46 
 
 
456 aa  321  1.9999999999999998e-86  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  40.13 
 
 
457 aa  318  1e-85  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  38.61 
 
 
466 aa  311  2e-83  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  36.6 
 
 
461 aa  302  8.000000000000001e-81  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  41.39 
 
 
449 aa  301  1e-80  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  40.3 
 
 
464 aa  298  1e-79  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  39.56 
 
 
450 aa  297  2e-79  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  38.56 
 
 
457 aa  298  2e-79  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  38.56 
 
 
456 aa  296  4e-79  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  39.22 
 
 
465 aa  296  6e-79  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  37.67 
 
 
449 aa  295  1e-78  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  35.56 
 
 
447 aa  294  2e-78  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  40.74 
 
 
461 aa  294  3e-78  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.83 
 
 
451 aa  293  5e-78  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1105  two component, sigma54 specific, Fis family transcriptional regulator  39.53 
 
 
475 aa  290  5.0000000000000004e-77  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.926771  normal  0.835973 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  38.43 
 
 
464 aa  288  9e-77  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  38.65 
 
 
457 aa  288  1e-76  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  38.1 
 
 
452 aa  287  2e-76  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0674  two-component response regulator CbrB  40.04 
 
 
453 aa  288  2e-76  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0916838  normal 
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  38.92 
 
 
452 aa  286  2.9999999999999996e-76  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  39.08 
 
 
463 aa  287  2.9999999999999996e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  37.71 
 
 
481 aa  287  2.9999999999999996e-76  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  37.71 
 
 
501 aa  286  4e-76  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1055  two component, sigma54 specific, Fis family transcriptional regulator  37.71 
 
 
481 aa  286  5e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.874499  n/a   
 
 
-
 
NC_011901  Tgr7_1028  response regulator receiver protein  40.38 
 
 
439 aa  286  5e-76  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.163891  n/a   
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  37.31 
 
 
456 aa  286  5.999999999999999e-76  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  38.21 
 
 
464 aa  286  8e-76  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  38.31 
 
 
461 aa  285  1.0000000000000001e-75  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_013173  Dbac_1833  two component, sigma54 specific, transcriptional regulator, Fis family  39.78 
 
 
460 aa  284  2.0000000000000002e-75  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.248577  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  38.1 
 
 
461 aa  284  2.0000000000000002e-75  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  38.13 
 
 
453 aa  283  3.0000000000000004e-75  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  37.5 
 
 
445 aa  283  3.0000000000000004e-75  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  37.55 
 
 
455 aa  283  3.0000000000000004e-75  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  38.1 
 
 
461 aa  283  4.0000000000000003e-75  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  38.1 
 
 
461 aa  283  4.0000000000000003e-75  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  38.1 
 
 
461 aa  283  4.0000000000000003e-75  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_008463  PA14_72380  two-component response regulator AlgB  39.21 
 
 
449 aa  283  4.0000000000000003e-75  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.415261  normal 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  38.1 
 
 
461 aa  283  4.0000000000000003e-75  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1894  two component, sigma54 specific, Fis family transcriptional regulator  39.07 
 
 
456 aa  283  5.000000000000001e-75  Halorhodospira halophila SL1  Bacteria  normal  0.410758  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  36.74 
 
 
452 aa  283  5.000000000000001e-75  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  39.95 
 
 
466 aa  283  5.000000000000001e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  37.63 
 
 
457 aa  282  9e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  38.71 
 
 
451 aa  282  1e-74  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  39.61 
 
 
452 aa  281  2e-74  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_009656  PSPA7_6282  two-component response regulator AlgB  38.55 
 
 
449 aa  281  2e-74  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  39.66 
 
 
458 aa  280  3e-74  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
455 aa  280  3e-74  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  40.36 
 
 
478 aa  280  4e-74  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  42.78 
 
 
470 aa  280  5e-74  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  37.42 
 
 
456 aa  279  6e-74  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_009439  Pmen_0176  two-component response regulator AlgB  38.24 
 
 
450 aa  279  7e-74  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  37.37 
 
 
460 aa  278  1e-73  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  36.46 
 
 
450 aa  278  1e-73  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  37.82 
 
 
461 aa  278  2e-73  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2828  two component, sigma54 specific, Fis family transcriptional regulator  38.7 
 
 
459 aa  278  2e-73  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2200  two component, sigma54 specific, transcriptional regulator, Fis family  39.54 
 
 
459 aa  277  2e-73  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  39.26 
 
 
454 aa  277  2e-73  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  38.15 
 
 
446 aa  277  2e-73  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  40.97 
 
 
446 aa  278  2e-73  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  37.93 
 
 
459 aa  277  2e-73  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  35.83 
 
 
483 aa  277  3e-73  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  37.77 
 
 
456 aa  277  3e-73  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  37.74 
 
 
458 aa  277  3e-73  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  38.44 
 
 
459 aa  277  3e-73  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  38.1 
 
 
459 aa  277  3e-73  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  39.49 
 
 
447 aa  277  3e-73  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  39.57 
 
 
460 aa  276  4e-73  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  41.81 
 
 
470 aa  276  4e-73  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_008554  Sfum_3111  two component, sigma54 specific, Fis family transcriptional regulator  39.08 
 
 
458 aa  276  4e-73  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  38.96 
 
 
459 aa  276  6e-73  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  37.44 
 
 
448 aa  276  6e-73  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0670  two component, sigma54 specific, Fis family transcriptional regulator  38.52 
 
 
464 aa  276  6e-73  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2618  two component, sigma54 specific, transcriptional regulator, Fis family  39.21 
 
 
453 aa  276  7e-73  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.153552  n/a   
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  38.96 
 
 
459 aa  276  7e-73  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_009997  Sbal195_2953  two component, sigma54 specific, Fis family transcriptional regulator  38.96 
 
 
459 aa  276  7e-73  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_008321  Shewmr4_1359  two component, sigma54 specific, Fis family transcriptional regulator  38.65 
 
 
459 aa  276  8e-73  Shewanella sp. MR-4  Bacteria  normal  normal  0.0913399 
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  38.65 
 
 
459 aa  275  8e-73  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  38.21 
 
 
453 aa  275  1.0000000000000001e-72  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  38.26 
 
 
459 aa  275  1.0000000000000001e-72  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  38.65 
 
 
459 aa  275  1.0000000000000001e-72  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_013440  Hoch_0018  two component, sigma54 specific, transcriptional regulator, Fis family  39.22 
 
 
461 aa  274  2.0000000000000002e-72  Haliangium ochraceum DSM 14365  Bacteria  normal  0.709029  normal  0.924426 
 
 
-
 
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