More than 300 homologs were found in PanDaTox collection
for query gene Sde_0306 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
457 aa  936    Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  55.23 
 
 
465 aa  477  1e-133  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  50.55 
 
 
466 aa  454  1.0000000000000001e-126  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  49.45 
 
 
466 aa  452  1.0000000000000001e-126  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  49.78 
 
 
456 aa  451  1e-125  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  50.11 
 
 
461 aa  446  1.0000000000000001e-124  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  48.02 
 
 
471 aa  436  1e-121  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  46.27 
 
 
456 aa  409  1e-113  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  46.58 
 
 
450 aa  398  1e-109  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  43.2 
 
 
450 aa  382  1e-105  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  41.58 
 
 
457 aa  357  2.9999999999999997e-97  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  42.36 
 
 
456 aa  351  1e-95  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  39.88 
 
 
478 aa  349  5e-95  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  42.12 
 
 
464 aa  346  5e-94  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  39.6 
 
 
484 aa  341  2e-92  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  39.6 
 
 
484 aa  340  2e-92  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  38.59 
 
 
494 aa  339  7e-92  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  41.3 
 
 
503 aa  338  8e-92  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  39.17 
 
 
475 aa  338  1.9999999999999998e-91  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  38.43 
 
 
493 aa  336  5.999999999999999e-91  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  38.07 
 
 
503 aa  334  2e-90  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  38.16 
 
 
485 aa  333  3e-90  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  40.34 
 
 
504 aa  332  6e-90  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  40.26 
 
 
456 aa  332  9e-90  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
447 aa  331  2e-89  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  37.75 
 
 
502 aa  330  3e-89  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
449 aa  330  3e-89  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  38.86 
 
 
449 aa  330  4e-89  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  37.35 
 
 
502 aa  327  3e-88  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  38.1 
 
 
496 aa  325  8.000000000000001e-88  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  36.71 
 
 
499 aa  324  2e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  38.41 
 
 
483 aa  324  2e-87  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  37.23 
 
 
482 aa  323  3e-87  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_012560  Avin_11120  Response regulator, sigma54-dependent regulatory protein; AlgB  39.07 
 
 
448 aa  315  8e-85  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  40.61 
 
 
448 aa  314  1.9999999999999998e-84  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  37.98 
 
 
465 aa  313  3.9999999999999997e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  37.88 
 
 
461 aa  312  7.999999999999999e-84  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_007492  Pfl01_0046  two-component response regulator AlgB  39.78 
 
 
448 aa  311  1e-83  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.384971 
 
 
-
 
NC_009656  PSPA7_6282  two-component response regulator AlgB  38.31 
 
 
449 aa  311  1e-83  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  39.95 
 
 
509 aa  310  2.9999999999999997e-83  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_72380  two-component response regulator AlgB  38.53 
 
 
449 aa  309  8e-83  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.415261  normal 
 
 
-
 
NC_007005  Psyr_0263  helix-turn-helix, Fis-type  38.75 
 
 
448 aa  308  9e-83  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
458 aa  309  9e-83  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0133  two component, sigma54 specific, transcriptional regulator, Fis family  38.75 
 
 
448 aa  308  1.0000000000000001e-82  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0334  alginate biosynthesis transcriptional regulatory protein AlgB  38.75 
 
 
448 aa  308  2.0000000000000002e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.368066  n/a   
 
 
-
 
NC_010322  PputGB1_0148  two component, sigma54 specific, Fis family transcriptional regulator  38.31 
 
 
448 aa  308  2.0000000000000002e-82  Pseudomonas putida GB-1  Bacteria  normal  normal  0.837927 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  42.09 
 
 
387 aa  306  3e-82  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0150  two component, sigma54 specific, Fis family transcriptional regulator  38.53 
 
 
448 aa  307  3e-82  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3302  two component, sigma54 specific, transcriptional regulator, Fis family  36.82 
 
 
472 aa  306  4.0000000000000004e-82  Haliangium ochraceum DSM 14365  Bacteria  normal  0.334689  normal  0.605218 
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  39.08 
 
 
452 aa  306  6e-82  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_007298  Daro_2923  two component, sigma54 specific, Fis family transcriptional regulator  37.67 
 
 
450 aa  305  9.000000000000001e-82  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.726219 
 
 
-
 
NC_010501  PputW619_5095  two component, sigma54 specific, Fis family transcriptional regulator  38.31 
 
 
448 aa  305  1.0000000000000001e-81  Pseudomonas putida W619  Bacteria  normal  normal  0.262214 
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.04 
 
 
461 aa  303  3.0000000000000004e-81  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  38.92 
 
 
458 aa  303  6.000000000000001e-81  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_002939  GSU0776  sigma-54 dependent DNA-binding response regulator  39.01 
 
 
465 aa  302  9e-81  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  37.94 
 
 
455 aa  302  1e-80  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  39.45 
 
 
457 aa  302  1e-80  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0018  two component, sigma54 specific, transcriptional regulator, Fis family  37.55 
 
 
461 aa  301  1e-80  Haliangium ochraceum DSM 14365  Bacteria  normal  0.709029  normal  0.924426 
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  37.69 
 
 
456 aa  301  2e-80  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  37.88 
 
 
454 aa  301  2e-80  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  39.96 
 
 
435 aa  300  3e-80  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  39.22 
 
 
448 aa  300  3e-80  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  38.18 
 
 
459 aa  300  4e-80  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_007519  Dde_0850  two component Fis family transcriptional regulator  38.24 
 
 
462 aa  300  5e-80  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  36.85 
 
 
463 aa  298  1e-79  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  38.97 
 
 
457 aa  297  2e-79  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  37.4 
 
 
491 aa  298  2e-79  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_009483  Gura_3391  two component, sigma-54 specific, Fis family transcriptional regulator  37.17 
 
 
455 aa  297  3e-79  Geobacter uraniireducens Rf4  Bacteria  normal  0.111806  n/a   
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  36.38 
 
 
476 aa  297  3e-79  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  37.04 
 
 
457 aa  296  4e-79  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  34.95 
 
 
483 aa  296  5e-79  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.5 
 
 
451 aa  296  5e-79  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  38.26 
 
 
460 aa  296  6e-79  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1058  two component, sigma54 specific, Fis family transcriptional regulator  38.13 
 
 
462 aa  296  6e-79  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0191246 
 
 
-
 
NC_008740  Maqu_0670  two component, sigma54 specific, Fis family transcriptional regulator  38.04 
 
 
464 aa  296  6e-79  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  37.66 
 
 
457 aa  294  2e-78  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  37.31 
 
 
458 aa  294  2e-78  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  36.98 
 
 
457 aa  293  3e-78  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  35.48 
 
 
464 aa  293  4e-78  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  35.06 
 
 
470 aa  293  4e-78  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  36.46 
 
 
454 aa  293  4e-78  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0176  two-component response regulator AlgB  37 
 
 
450 aa  293  5e-78  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1954  two component, sigma54 specific, transcriptional regulator, Fis family  38.83 
 
 
455 aa  293  6e-78  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  36.72 
 
 
457 aa  292  7e-78  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3572  two component, sigma-54 specific, Fis family transcriptional regulator  36.58 
 
 
457 aa  292  7e-78  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  35.7 
 
 
463 aa  292  7e-78  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2280  two component, sigma54 specific, transcriptional regulator, Fis family  36.98 
 
 
453 aa  292  7e-78  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.620123 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  37.97 
 
 
459 aa  292  9e-78  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  38.41 
 
 
459 aa  291  1e-77  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  36.05 
 
 
458 aa  291  1e-77  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  36.9 
 
 
457 aa  292  1e-77  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0124  two component, sigma54 specific, transcriptional regulator, Fis family  37.23 
 
 
459 aa  291  1e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.99079  n/a   
 
 
-
 
NC_011146  Gbem_2269  two component, sigma54 specific, transcriptional regulator, Fis family  37.96 
 
 
456 aa  291  1e-77  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1649  two component, sigma54 specific, Fis family transcriptional regulator  35.51 
 
 
479 aa  291  1e-77  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  35.48 
 
 
464 aa  292  1e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  36.92 
 
 
470 aa  291  2e-77  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  34.19 
 
 
459 aa  291  2e-77  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  37.22 
 
 
466 aa  291  2e-77  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  37.23 
 
 
458 aa  290  3e-77  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1488  two component, sigma54 specific, Fis family transcriptional regulator  36.11 
 
 
464 aa  290  3e-77  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.781886  normal  0.688737 
 
 
-
 
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