More than 300 homologs were found in PanDaTox collection
for query gene Shewmr4_0866 on replicon NC_008321
Organism: Shewanella sp. MR-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  70.71 
 
 
485 aa  691    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  80.36 
 
 
502 aa  800    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  86.98 
 
 
475 aa  848    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  81.91 
 
 
493 aa  810    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  80.88 
 
 
503 aa  810    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  69.05 
 
 
499 aa  699    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  80.84 
 
 
502 aa  803    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  69.16 
 
 
509 aa  702    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  69.12 
 
 
496 aa  710    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  72.38 
 
 
494 aa  718    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
484 aa  993    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  98.76 
 
 
484 aa  984    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  71.78 
 
 
482 aa  701    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  90.55 
 
 
478 aa  893    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  67.28 
 
 
504 aa  652    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  52.37 
 
 
448 aa  470  1.0000000000000001e-131  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  53.31 
 
 
435 aa  456  1e-127  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  40.7 
 
 
456 aa  349  6e-95  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  40.45 
 
 
471 aa  349  7e-95  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  38.82 
 
 
461 aa  341  2e-92  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  38.37 
 
 
466 aa  338  1.9999999999999998e-91  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  38.85 
 
 
457 aa  334  2e-90  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  38.24 
 
 
466 aa  333  3e-90  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  39.76 
 
 
464 aa  325  2e-87  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  39.34 
 
 
450 aa  319  7e-86  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  39.24 
 
 
465 aa  315  8e-85  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  45.57 
 
 
502 aa  311  2e-83  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  37.42 
 
 
470 aa  309  8e-83  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  37.76 
 
 
463 aa  308  1.0000000000000001e-82  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.93 
 
 
451 aa  307  2.0000000000000002e-82  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  37.42 
 
 
452 aa  306  7e-82  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  38.29 
 
 
483 aa  304  2.0000000000000002e-81  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  37.27 
 
 
450 aa  304  2.0000000000000002e-81  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  37.32 
 
 
487 aa  303  5.000000000000001e-81  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  39.15 
 
 
470 aa  301  1e-80  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  39.1 
 
 
473 aa  300  4e-80  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  39.1 
 
 
473 aa  300  4e-80  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  38.9 
 
 
473 aa  299  7e-80  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  39.63 
 
 
455 aa  299  7e-80  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  38.78 
 
 
452 aa  297  2e-79  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  37.68 
 
 
457 aa  297  2e-79  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  38.9 
 
 
456 aa  297  2e-79  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  39.66 
 
 
452 aa  297  2e-79  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  36.81 
 
 
459 aa  297  4e-79  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  34.84 
 
 
447 aa  296  5e-79  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  39.01 
 
 
460 aa  296  6e-79  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  37.86 
 
 
444 aa  294  3e-78  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  37.17 
 
 
457 aa  294  3e-78  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  37.4 
 
 
503 aa  294  3e-78  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  38.81 
 
 
449 aa  292  8e-78  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  37.55 
 
 
453 aa  292  8e-78  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  36.91 
 
 
470 aa  292  9e-78  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
457 aa  291  1e-77  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  38.1 
 
 
444 aa  292  1e-77  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  37.63 
 
 
453 aa  291  2e-77  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2731  two component, sigma54 specific, Fis family transcriptional regulator  36.99 
 
 
505 aa  291  2e-77  Chelativorans sp. BNC1  Bacteria  normal  0.487615  n/a   
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  37.25 
 
 
472 aa  291  2e-77  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  38.57 
 
 
454 aa  290  3e-77  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  36.76 
 
 
457 aa  290  3e-77  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  36.18 
 
 
449 aa  290  3e-77  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  37.58 
 
 
456 aa  290  3e-77  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  36.89 
 
 
461 aa  290  4e-77  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  39.14 
 
 
471 aa  290  4e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  38.31 
 
 
444 aa  290  4e-77  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  38.14 
 
 
458 aa  290  4e-77  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  38 
 
 
515 aa  290  5.0000000000000004e-77  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_011830  Dhaf_4674  two component, sigma54 specific, transcriptional regulator, Fis family  37.37 
 
 
463 aa  290  5.0000000000000004e-77  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  41.86 
 
 
466 aa  290  5.0000000000000004e-77  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  43.26 
 
 
471 aa  289  7e-77  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  37.42 
 
 
492 aa  289  7e-77  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  37.09 
 
 
465 aa  289  9e-77  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  36.05 
 
 
455 aa  288  1e-76  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  41.24 
 
 
484 aa  288  1e-76  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  36.44 
 
 
483 aa  288  1e-76  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_011145  AnaeK_3419  two component, sigma54 specific, transcriptional regulator, Fis family  37.47 
 
 
455 aa  288  2e-76  Anaeromyxobacter sp. K  Bacteria  normal  0.683267  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  37.22 
 
 
457 aa  287  2e-76  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  34.74 
 
 
459 aa  288  2e-76  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  37.58 
 
 
450 aa  287  2.9999999999999996e-76  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  41.98 
 
 
470 aa  286  4e-76  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  41.98 
 
 
473 aa  287  4e-76  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  42.61 
 
 
453 aa  286  5e-76  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  36.33 
 
 
456 aa  286  5e-76  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  37.68 
 
 
501 aa  286  5e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  36.33 
 
 
501 aa  286  7e-76  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  36.35 
 
 
509 aa  286  7e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1055  two component, sigma54 specific, Fis family transcriptional regulator  36.33 
 
 
481 aa  286  7e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.874499  n/a   
 
 
-
 
NC_007760  Adeh_3338  two component, sigma54 specific, Fis family transcriptional regulator  37.07 
 
 
453 aa  286  7e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.693368  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  37.94 
 
 
448 aa  286  7e-76  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  36.38 
 
 
459 aa  286  7e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  36.23 
 
 
481 aa  286  8e-76  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3483  two component, sigma54 specific, transcriptional regulator, Fis family  37.27 
 
 
455 aa  285  1.0000000000000001e-75  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0480061  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  42.24 
 
 
451 aa  284  2.0000000000000002e-75  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  36.53 
 
 
466 aa  284  2.0000000000000002e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  38.74 
 
 
466 aa  285  2.0000000000000002e-75  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0382  two component, sigma54 specific, transcriptional regulator, Fis family  36.79 
 
 
451 aa  284  3.0000000000000004e-75  Thauera sp. MZ1T  Bacteria  normal  0.803996  n/a   
 
 
-
 
NC_009636  Smed_2683  two component, sigma54 specific, Fis family transcriptional regulator  35.94 
 
 
549 aa  283  3.0000000000000004e-75  Sinorhizobium medicae WSM419  Bacteria  normal  0.272019  normal  0.67062 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  35.66 
 
 
456 aa  284  3.0000000000000004e-75  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  36.33 
 
 
464 aa  283  4.0000000000000003e-75  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  40.47 
 
 
452 aa  283  4.0000000000000003e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  36.7 
 
 
463 aa  283  5.000000000000001e-75  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
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