More than 300 homologs were found in PanDaTox collection
for query gene Sfri_0901 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  66.86 
 
 
509 aa  686    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  68.94 
 
 
502 aa  692    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  70.18 
 
 
494 aa  702    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  71.43 
 
 
478 aa  698    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  72.73 
 
 
475 aa  701    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  68.8 
 
 
503 aa  691    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  70.61 
 
 
493 aa  699    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  68.34 
 
 
499 aa  697    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  70.19 
 
 
485 aa  696    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  69.7 
 
 
496 aa  701    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  68.74 
 
 
502 aa  687    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  66.31 
 
 
504 aa  649    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  71.78 
 
 
484 aa  701    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  72.2 
 
 
484 aa  703    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  100 
 
 
482 aa  990    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  51.08 
 
 
448 aa  461  1e-129  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  52.69 
 
 
435 aa  444  1e-123  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  40.3 
 
 
456 aa  356  5e-97  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  41.31 
 
 
471 aa  350  3e-95  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  40.79 
 
 
464 aa  330  3e-89  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  37.08 
 
 
466 aa  320  3e-86  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  36.38 
 
 
466 aa  319  7.999999999999999e-86  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  41.14 
 
 
450 aa  318  1e-85  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  36.81 
 
 
447 aa  318  2e-85  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  37.23 
 
 
457 aa  316  8e-85  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  38.77 
 
 
465 aa  315  9e-85  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  38.53 
 
 
461 aa  315  9.999999999999999e-85  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  38.9 
 
 
487 aa  314  1.9999999999999998e-84  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  35.96 
 
 
449 aa  306  8.000000000000001e-82  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  38.81 
 
 
451 aa  304  2.0000000000000002e-81  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  35.67 
 
 
470 aa  303  4.0000000000000003e-81  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  38.49 
 
 
473 aa  302  9e-81  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  38.28 
 
 
473 aa  300  4e-80  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  38.28 
 
 
473 aa  300  4e-80  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  36.75 
 
 
450 aa  300  5e-80  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  38.35 
 
 
457 aa  299  6e-80  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  37.74 
 
 
453 aa  298  1e-79  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  38.03 
 
 
456 aa  298  1e-79  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  37.39 
 
 
457 aa  295  9e-79  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  36.86 
 
 
470 aa  295  1e-78  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  37.08 
 
 
452 aa  295  1e-78  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  38.22 
 
 
460 aa  294  2e-78  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  38.3 
 
 
466 aa  295  2e-78  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  37.13 
 
 
456 aa  293  6e-78  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  36.75 
 
 
457 aa  292  1e-77  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  36.09 
 
 
452 aa  291  1e-77  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  36.76 
 
 
454 aa  292  1e-77  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  42.89 
 
 
502 aa  291  1e-77  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  36.46 
 
 
463 aa  290  3e-77  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  36.95 
 
 
452 aa  290  4e-77  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  36.67 
 
 
453 aa  289  7e-77  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  37.16 
 
 
448 aa  288  1e-76  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  35.97 
 
 
444 aa  287  2.9999999999999996e-76  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  35.07 
 
 
483 aa  287  2.9999999999999996e-76  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  37.58 
 
 
444 aa  287  2.9999999999999996e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  37.47 
 
 
454 aa  287  2.9999999999999996e-76  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  37 
 
 
461 aa  286  4e-76  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  34.18 
 
 
459 aa  286  4e-76  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  36.06 
 
 
456 aa  286  5.999999999999999e-76  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  35.68 
 
 
459 aa  286  8e-76  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  37.79 
 
 
444 aa  285  9e-76  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  41.03 
 
 
501 aa  285  1.0000000000000001e-75  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  36.6 
 
 
450 aa  284  3.0000000000000004e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  36.02 
 
 
455 aa  283  5.000000000000001e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  40.66 
 
 
473 aa  283  6.000000000000001e-75  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  39.7 
 
 
470 aa  282  8.000000000000001e-75  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  36.09 
 
 
466 aa  282  9e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  37.13 
 
 
448 aa  281  1e-74  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  35.88 
 
 
464 aa  281  1e-74  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  36.52 
 
 
457 aa  282  1e-74  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0382  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
451 aa  281  2e-74  Thauera sp. MZ1T  Bacteria  normal  0.803996  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  38.03 
 
 
458 aa  281  2e-74  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  37.97 
 
 
466 aa  281  2e-74  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  40.15 
 
 
470 aa  281  2e-74  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  35.05 
 
 
452 aa  280  3e-74  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  37.34 
 
 
515 aa  280  3e-74  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_011883  Ddes_0187  two component, sigma54 specific, transcriptional regulator, Fis family  37.63 
 
 
457 aa  280  4e-74  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  36.13 
 
 
472 aa  280  4e-74  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_011891  A2cp1_0124  two component, sigma54 specific, transcriptional regulator, Fis family  36.6 
 
 
459 aa  280  4e-74  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.99079  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  37.07 
 
 
451 aa  280  6e-74  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  35.36 
 
 
509 aa  279  7e-74  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1003  nitrogen regulation protein NR(I)  35.85 
 
 
481 aa  279  9e-74  Geobacter sulfurreducens PCA  Bacteria  normal  0.158383  n/a   
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  35.4 
 
 
483 aa  279  1e-73  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  36.05 
 
 
480 aa  278  1e-73  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_009675  Anae109_0110  two component, sigma54 specific, Fis family transcriptional regulator  35.74 
 
 
457 aa  278  1e-73  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.200769  normal  0.23433 
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  34.67 
 
 
467 aa  278  2e-73  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  35.46 
 
 
463 aa  277  2e-73  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  37.07 
 
 
451 aa  278  2e-73  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  35.34 
 
 
511 aa  278  2e-73  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  35.52 
 
 
464 aa  277  2e-73  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_012918  GM21_2232  two component, sigma54 specific, transcriptional regulator, Fis family  35.49 
 
 
509 aa  277  2e-73  Geobacter sp. M21  Bacteria  n/a    normal  0.0243568 
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  34.31 
 
 
458 aa  278  2e-73  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  40.86 
 
 
471 aa  277  3e-73  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  36.12 
 
 
465 aa  277  3e-73  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  35.11 
 
 
458 aa  277  3e-73  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  35.55 
 
 
503 aa  277  3e-73  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  35.74 
 
 
450 aa  277  3e-73  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_008751  Dvul_1657  two component, sigma54 specific, Fis family transcriptional regulator  35.86 
 
 
459 aa  277  3e-73  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.000574549  normal  0.302016 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  36.86 
 
 
465 aa  276  4e-73  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  37.53 
 
 
450 aa  276  5e-73  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
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