More than 300 homologs were found in PanDaTox collection
for query gene Shew185_1001 on replicon NC_009665
Organism: Shewanella baltica OS185



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  79.22 
 
 
475 aa  793    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  68.05 
 
 
499 aa  677    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  68.96 
 
 
509 aa  696    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
502 aa  1026    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  96.02 
 
 
503 aa  980    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  68.51 
 
 
496 aa  696    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  72.51 
 
 
494 aa  723    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  80.36 
 
 
484 aa  800    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  80.51 
 
 
484 aa  805    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  70.06 
 
 
485 aa  691    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  68.74 
 
 
482 aa  687    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  95.23 
 
 
493 aa  966    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  80.84 
 
 
478 aa  802    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  98.21 
 
 
502 aa  1003    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  64.8 
 
 
504 aa  632  1e-180  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  57.84 
 
 
448 aa  439  9.999999999999999e-123  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  60.51 
 
 
435 aa  430  1e-119  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  45.04 
 
 
456 aa  337  2.9999999999999997e-91  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  44.78 
 
 
471 aa  325  1e-87  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  36.65 
 
 
461 aa  322  9.999999999999999e-87  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  41.96 
 
 
457 aa  321  1.9999999999999998e-86  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  36.29 
 
 
466 aa  319  7e-86  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  35.84 
 
 
466 aa  313  2.9999999999999996e-84  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  39.84 
 
 
470 aa  308  2.0000000000000002e-82  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  38.1 
 
 
464 aa  307  3e-82  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  37.28 
 
 
463 aa  300  3e-80  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  36.86 
 
 
465 aa  300  4e-80  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  38.16 
 
 
487 aa  300  4e-80  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  36.51 
 
 
470 aa  300  5e-80  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  39.41 
 
 
473 aa  299  8e-80  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  39.41 
 
 
473 aa  299  9e-80  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  44.61 
 
 
450 aa  299  9e-80  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  39.41 
 
 
473 aa  299  9e-80  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  44.19 
 
 
502 aa  298  1e-79  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  38.22 
 
 
460 aa  296  6e-79  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  35.71 
 
 
450 aa  295  1e-78  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  43.62 
 
 
501 aa  293  6e-78  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  34.33 
 
 
447 aa  291  1e-77  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  36.35 
 
 
457 aa  291  2e-77  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  37.52 
 
 
455 aa  290  3e-77  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  36.15 
 
 
503 aa  289  7e-77  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  43 
 
 
471 aa  289  8e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  36.15 
 
 
483 aa  289  9e-77  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  41.79 
 
 
458 aa  288  1e-76  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  36.51 
 
 
472 aa  288  1e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_008254  Meso_2731  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
505 aa  289  1e-76  Chelativorans sp. BNC1  Bacteria  normal  0.487615  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  42.89 
 
 
471 aa  288  2e-76  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  36.85 
 
 
509 aa  288  2e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  36.71 
 
 
457 aa  288  2e-76  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.98 
 
 
454 aa  287  2.9999999999999996e-76  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  41.03 
 
 
470 aa  287  2.9999999999999996e-76  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42 
 
 
451 aa  287  2.9999999999999996e-76  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  37.4 
 
 
456 aa  287  2.9999999999999996e-76  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  42.13 
 
 
470 aa  286  4e-76  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  41.51 
 
 
452 aa  286  5e-76  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  36.31 
 
 
457 aa  286  5e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  41.02 
 
 
451 aa  286  5.999999999999999e-76  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  42.07 
 
 
473 aa  286  5.999999999999999e-76  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  33 
 
 
449 aa  285  2.0000000000000002e-75  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  35.77 
 
 
459 aa  284  3.0000000000000004e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  40.53 
 
 
451 aa  284  3.0000000000000004e-75  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  42.53 
 
 
452 aa  283  4.0000000000000003e-75  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  37.98 
 
 
515 aa  283  4.0000000000000003e-75  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  40.15 
 
 
452 aa  283  4.0000000000000003e-75  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009483  Gura_2387  two component, sigma-54 specific, Fis family transcriptional regulator  35.65 
 
 
510 aa  283  4.0000000000000003e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  40.57 
 
 
460 aa  283  5.000000000000001e-75  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.15 
 
 
457 aa  283  5.000000000000001e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0018  two component, sigma54 specific, transcriptional regulator, Fis family  40.49 
 
 
461 aa  283  6.000000000000001e-75  Haliangium ochraceum DSM 14365  Bacteria  normal  0.709029  normal  0.924426 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  41.01 
 
 
452 aa  283  7.000000000000001e-75  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  35.69 
 
 
457 aa  282  9e-75  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  40.53 
 
 
451 aa  282  9e-75  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  35.36 
 
 
459 aa  282  1e-74  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  36.9 
 
 
465 aa  281  1e-74  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  41.6 
 
 
466 aa  282  1e-74  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_2232  two component, sigma54 specific, transcriptional regulator, Fis family  36.28 
 
 
509 aa  281  2e-74  Geobacter sp. M21  Bacteria  n/a    normal  0.0243568 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  35.43 
 
 
455 aa  281  2e-74  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  40.92 
 
 
453 aa  281  3e-74  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  36.38 
 
 
444 aa  280  3e-74  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  37.1 
 
 
461 aa  280  3e-74  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  40.72 
 
 
484 aa  281  3e-74  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  36.22 
 
 
483 aa  280  3e-74  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_008607  Ppro_3647  two component, sigma54 specific, Fis family transcriptional regulator  39.95 
 
 
451 aa  281  3e-74  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  35.69 
 
 
457 aa  280  5e-74  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  41.04 
 
 
492 aa  280  6e-74  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3295  two component, sigma54 specific, transcriptional regulator, Fis family  37.66 
 
 
514 aa  280  6e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.836784  normal 
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  36.79 
 
 
448 aa  279  7e-74  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2683  two component, sigma54 specific, Fis family transcriptional regulator  35.7 
 
 
549 aa  279  8e-74  Sinorhizobium medicae WSM419  Bacteria  normal  0.272019  normal  0.67062 
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  36.9 
 
 
450 aa  279  9e-74  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  36.72 
 
 
454 aa  279  9e-74  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  35.83 
 
 
458 aa  279  1e-73  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  40.78 
 
 
456 aa  278  2e-73  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  41.12 
 
 
453 aa  278  2e-73  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  40.93 
 
 
463 aa  277  3e-73  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  35.66 
 
 
511 aa  277  3e-73  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  40.72 
 
 
458 aa  276  4e-73  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_011145  AnaeK_0113  two component, sigma54 specific, transcriptional regulator, Fis family  35.84 
 
 
459 aa  276  4e-73  Anaeromyxobacter sp. K  Bacteria  normal  0.212971  n/a   
 
 
-
 
NC_012850  Rleg_3596  two component, sigma54 specific, transcriptional regulator, Fis family  37.45 
 
 
515 aa  276  6e-73  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.363783 
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  36.44 
 
 
449 aa  276  6e-73  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  35.11 
 
 
456 aa  276  6e-73  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_011989  Avi_3699  sigma 54 dependent transcriptional activator  37.53 
 
 
439 aa  276  7e-73  Agrobacterium vitis S4  Bacteria  normal  0.112832  n/a   
 
 
-
 
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