More than 300 homologs were found in PanDaTox collection
for query gene CPS_0576 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  100 
 
 
435 aa  888    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  51.82 
 
 
496 aa  475  1e-133  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  53.51 
 
 
484 aa  469  1.0000000000000001e-131  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  54.01 
 
 
475 aa  466  9.999999999999999e-131  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  53.31 
 
 
484 aa  467  9.999999999999999e-131  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  53.56 
 
 
478 aa  467  9.999999999999999e-131  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  52.16 
 
 
485 aa  462  1e-129  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  52.13 
 
 
494 aa  462  1e-129  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  52.85 
 
 
493 aa  460  9.999999999999999e-129  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  52.69 
 
 
482 aa  455  1e-127  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  50.8 
 
 
499 aa  457  1e-127  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  60.51 
 
 
502 aa  442  1e-123  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  60.77 
 
 
502 aa  444  1e-123  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  50.11 
 
 
504 aa  444  1e-123  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  60.26 
 
 
503 aa  444  1e-123  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  57.99 
 
 
509 aa  432  1e-120  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  49.44 
 
 
448 aa  413  1e-114  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  40.78 
 
 
466 aa  342  9e-93  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  41.03 
 
 
456 aa  338  9.999999999999999e-92  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  41.38 
 
 
466 aa  336  3.9999999999999995e-91  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  41.18 
 
 
447 aa  335  1e-90  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  38.74 
 
 
461 aa  327  3e-88  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  39.91 
 
 
471 aa  323  3e-87  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  40.13 
 
 
449 aa  323  4e-87  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  40.44 
 
 
456 aa  318  1e-85  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  41.12 
 
 
450 aa  318  2e-85  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  39.51 
 
 
450 aa  317  2e-85  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  39.78 
 
 
449 aa  317  2e-85  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  39.71 
 
 
483 aa  309  5.9999999999999995e-83  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
457 aa  306  4.0000000000000004e-82  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  38.7 
 
 
463 aa  305  1.0000000000000001e-81  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_009483  Gura_2387  two component, sigma-54 specific, Fis family transcriptional regulator  43.68 
 
 
510 aa  304  2.0000000000000002e-81  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  39.51 
 
 
465 aa  300  3e-80  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  40.83 
 
 
478 aa  300  3e-80  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  38.8 
 
 
456 aa  300  3e-80  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  41.36 
 
 
448 aa  300  5e-80  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1756  two component, sigma54 specific, Fis family transcriptional regulator  39.42 
 
 
450 aa  299  5e-80  Shewanella pealeana ATCC 700345  Bacteria  normal  0.562134  n/a   
 
 
-
 
NC_007517  Gmet_1055  two component, sigma54 specific, Fis family transcriptional regulator  36.11 
 
 
508 aa  298  9e-80  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00334907 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  38.86 
 
 
464 aa  298  1e-79  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_0838  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
457 aa  298  1e-79  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  41.36 
 
 
479 aa  298  2e-79  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  39.69 
 
 
452 aa  298  2e-79  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011728  BbuZS7_0791  acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor)  38.91 
 
 
451 aa  296  5e-79  Borrelia burgdorferi ZS7  Bacteria  normal  0.261898  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  38.7 
 
 
444 aa  295  7e-79  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  40.09 
 
 
448 aa  295  8e-79  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  39.38 
 
 
445 aa  295  1e-78  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  40.62 
 
 
387 aa  294  2e-78  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  41.71 
 
 
481 aa  294  2e-78  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
446 aa  293  3e-78  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  39.3 
 
 
470 aa  294  3e-78  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_012912  Dd1591_4159  nitrogen regulation protein NR(I)  41.78 
 
 
470 aa  293  4e-78  Dickeya zeae Ech1591  Bacteria  normal  0.086406  n/a   
 
 
-
 
NC_011901  Tgr7_1028  response regulator receiver protein  38.74 
 
 
439 aa  293  5e-78  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.163891  n/a   
 
 
-
 
NC_012880  Dd703_3962  nitrogen regulation protein NR(I)  41.78 
 
 
470 aa  293  5e-78  Dickeya dadantii Ech703  Bacteria  normal  0.389706  n/a   
 
 
-
 
NC_009832  Spro_4883  nitrogen regulation protein NR(I)  42.04 
 
 
470 aa  292  8e-78  Serratia proteamaculans 568  Bacteria  normal  0.177074  hitchhiker  0.0000322182 
 
 
-
 
NC_012917  PC1_4222  nitrogen regulation protein NR(I)  41.78 
 
 
470 aa  292  9e-78  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.327829  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  39.3 
 
 
473 aa  291  2e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  39.3 
 
 
473 aa  291  2e-77  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  41.39 
 
 
470 aa  291  2e-77  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  42.08 
 
 
447 aa  290  3e-77  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_013421  Pecwa_4505  nitrogen regulation protein NR(I)  41.97 
 
 
470 aa  290  4e-77  Pectobacterium wasabiae WPP163  Bacteria  normal  0.565329  n/a   
 
 
-
 
NC_008340  Mlg_0674  two-component response regulator CbrB  37.2 
 
 
453 aa  290  4e-77  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0916838  normal 
 
 
-
 
NC_013440  Hoch_3302  two component, sigma54 specific, transcriptional regulator, Fis family  37.92 
 
 
472 aa  290  4e-77  Haliangium ochraceum DSM 14365  Bacteria  normal  0.334689  normal  0.605218 
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  39.81 
 
 
472 aa  289  5.0000000000000004e-77  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  38.73 
 
 
446 aa  289  7e-77  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  36.32 
 
 
437 aa  288  1e-76  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  37.14 
 
 
470 aa  288  1e-76  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  41.19 
 
 
470 aa  288  1e-76  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  38.94 
 
 
446 aa  287  2e-76  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  38.48 
 
 
461 aa  288  2e-76  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  36.17 
 
 
490 aa  288  2e-76  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  38.84 
 
 
473 aa  288  2e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  41.8 
 
 
509 aa  287  2e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  42.6 
 
 
446 aa  288  2e-76  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  35.83 
 
 
478 aa  288  2e-76  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  43.65 
 
 
502 aa  288  2e-76  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  38.48 
 
 
461 aa  287  2e-76  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009831  Ssed_1798  two component, sigma54 specific, Fis family transcriptional regulator  38.53 
 
 
450 aa  286  2.9999999999999996e-76  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0734  nitrogen metabolism transcriptional regulator, NtrC, Fis family  36.46 
 
 
477 aa  287  2.9999999999999996e-76  Marinomonas sp. MWYL1  Bacteria  normal  0.942918  normal 
 
 
-
 
NC_012918  GM21_2232  two component, sigma54 specific, transcriptional regulator, Fis family  39.29 
 
 
509 aa  287  2.9999999999999996e-76  Geobacter sp. M21  Bacteria  n/a    normal  0.0243568 
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  41.45 
 
 
469 aa  287  2.9999999999999996e-76  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  37.37 
 
 
459 aa  286  2.9999999999999996e-76  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  38.48 
 
 
461 aa  286  4e-76  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  38.48 
 
 
461 aa  286  4e-76  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  38.28 
 
 
459 aa  286  4e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  38.48 
 
 
461 aa  286  4e-76  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  36.81 
 
 
489 aa  286  4e-76  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  39.11 
 
 
484 aa  286  4e-76  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  39.61 
 
 
446 aa  286  4e-76  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  38.48 
 
 
461 aa  286  4e-76  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  36.81 
 
 
489 aa  286  4e-76  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  37.89 
 
 
454 aa  286  5e-76  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  39.17 
 
 
446 aa  285  9e-76  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  40.91 
 
 
469 aa  285  1.0000000000000001e-75  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  37.36 
 
 
461 aa  285  1.0000000000000001e-75  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  37.36 
 
 
461 aa  285  1.0000000000000001e-75  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  37.89 
 
 
455 aa  285  1.0000000000000001e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  35.94 
 
 
437 aa  285  2.0000000000000002e-75  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  38.43 
 
 
449 aa  284  2.0000000000000002e-75  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  39.64 
 
 
447 aa  284  2.0000000000000002e-75  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2797  two component, sigma54 specific, Fis family transcriptional regulator  38.75 
 
 
450 aa  283  3.0000000000000004e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
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