| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3719 |
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| Symbol | |
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| ID | 5610267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4525150 |
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| End bp | 4526649 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934672 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001475451 |
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| Protein GI | 157376851 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.540881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACGA TTCTTATTGT CGATGATAAT CAGGCCGTGT GTAATGCGCT GGCCTTGATG
CTGGAGCTTC ACGGTTATCA GCCGCTCACC TGTTTATCTC CCGATACCGC CCTGGAGTTG
ATACATCTGC ACGATATATC TCTGGTGATC CAAGATATGA ACTTCACTCA AGACACCACA
TCCGGTGAAG AGGGCAAAGC GCTGTTTTAT GCCATCAGAG GCCTTCAACC TGAGTTGCCC
ATTATATTAT TGACCGCCTG GACTCAGCTA GAGATAGCGG TAGAGCTGGT TAAAGAGGGC
GCGGCAGATT ACATGGGGAA GCCTTGGGAG GATGCCAAGT TGCTGACCAG TATCAATAAT
CTTATCTCGC TACATACACT TTCAAAAGCC AATACTCAGC TTAAGCGGGT CGAAAATGAG
CGCATGTCTG CCATCAAGGG CGCGGATCTA TGTGGCATCG TTTTCGGCAG TGGTGCCATG
CAGCGTTGTG TCGATTTAGC CCTGCAGATA GCACGCTCCG ATGTGTCTGT ATTGATCACC
GGTCCTAACG GCGCCGGCAA AGATAAGCTC GCCGATATCA TTCATGCTAA CTCGCCCCTT
AAGAGTAAAC CCTTTATTAA GGTGAACATT GGCGCACTGC CTATGGAGCT ATTAGAGGCG
GAGCTGTTTG GTGCAGAGGC CGGGGCCTTT ACTGGGGCGA ACAAGACTCG TATCGGTCGC
TTCGAAGCGG CGGATGGCGG CACCCTGTTT TTAGATGAGA TAGGTAACTT ACCGCTATCT
GGTCAGGTGA AGTTACTGCG GGTACTTCAA ACCGGTGAGT TTGAACGCTT AGGCAGTCAT
CAGACCCGTA AAGTTAATGT GCGGGTGCTC AGTGCTACAA ATGCCGATCT GGACGAAGAG
ATCAGGACTG GGCGTTTTCG TGAGGATCTC TTCTATCGAC TCAACGTGAT TGAGTTGGCG
TTACCGCCAC TCAATGCCCG CTGCGACGAT ATTCTGCCTC TGATCGGTCA TTTTGTCGGC
CCGGATTTCT CGCTGAACAA ACAGGCTCAG CAGGTGCTTG TTGAGCATCA ATGGCCGGGT
AATGTCAGAG AGCTCGAAAA TGTCTGCAAG CGTGCGGTGA TACTGGCGCA GGATAGCGTG
TTAACGGTGG AAGACTTTGG ATTGATAACG AGCTCGGGAG CCAACCTTAC GCATAGACAG
ACTGAGCTTA GCCGAGTTGA GCATAAGCAA ACAGCGGATG TCGATAAACC CACTGCGGAT
GAGGCCCGTA ACGCCACTTC AACTCAGGCG TTGGCCGAAA CGAACACAGG AGAAGCCCTC
GATTCGACAA GTTCCCAGCC TCTGAGCAAG GAGTCTCTGA GCAAGGAACC TTTGGACAAG
GCGAGCATTG AAGAGGCTTT ACTCGAGCAC AGTGGCATTA TAGCCAGAGT CGCCAAGTCA
CTGGGCCTCA GCCGACAAGC CCTGTATAGA CGTATGGAAA AGTTTGGTAT CGATAAATAA
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| Protein sequence | MDTILIVDDN QAVCNALALM LELHGYQPLT CLSPDTALEL IHLHDISLVI QDMNFTQDTT
SGEEGKALFY AIRGLQPELP IILLTAWTQL EIAVELVKEG AADYMGKPWE DAKLLTSINN
LISLHTLSKA NTQLKRVENE RMSAIKGADL CGIVFGSGAM QRCVDLALQI ARSDVSVLIT
GPNGAGKDKL ADIIHANSPL KSKPFIKVNI GALPMELLEA ELFGAEAGAF TGANKTRIGR
FEAADGGTLF LDEIGNLPLS GQVKLLRVLQ TGEFERLGSH QTRKVNVRVL SATNADLDEE
IRTGRFREDL FYRLNVIELA LPPLNARCDD ILPLIGHFVG PDFSLNKQAQ QVLVEHQWPG
NVRELENVCK RAVILAQDSV LTVEDFGLIT SSGANLTHRQ TELSRVEHKQ TADVDKPTAD
EARNATSTQA LAETNTGEAL DSTSSQPLSK ESLSKEPLDK ASIEEALLEH SGIIARVAKS
LGLSRQALYR RMEKFGIDK
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