| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1894 |
|---|
| Symbol | |
|---|
| ID | 4710688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2084012 |
|---|
| End bp | 2085382 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639856367 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_001003460 |
|---|
| Protein GI | 121998673 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.410758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACC TGCTGCTACT CGAGGACGAA GCCGTTATCC GCAAGGCCTT GGACCGGCTG
CTGAGCCGTC ACGGGTACAG CGTCCACCAG GCCGACTCCC TGGAGCAGGC CCAAGAGCGC
TGGAACCTGG ACGCCTTCGA CCTGATCCTC GCGGATATGC GGCTGCCCGG CGAGCCCGGC
ACCGAGGCCA TCGGGCGCAC CGCAGCGCCG GTGATCATCA TGACCAGCTA CGCCAGCGTG
CAGTCGGCGG TGGAGGCGAT GCGCCAGGGG GCAGCCGACT ACATCGCCAA GCCCTTTGAC
CACGACGAAC TGTTGCTGCT CGTCGAACGC ACCCTCAAGG AGGGCCGCCT GCAGCGGCAG
AATGCGGCGC TGAAGGCCCA TATCGAGCGC GATTACCCGG TCACCGGGAT TGTCGGCAAC
TGCGAGGCGA TGCAGAAGGT CTTCGAGCGC ATCCGCAAGG TCGCCCCGAC CGACACCTCG
GTCCTGATCC TGGGCGAATC GGGCACCGGC AAGGAGCTGG TGGCCCGGGC GTTACACGAG
CAAAGCGAGC GCCACGAGGG TCCGCTGGTG GCGGTCAACT GCGCGGCGAT CCCCGACGGG
CTGATCGAGG CGGAGCTCTT CGGCCATGAG CGGGGCGCAT TCACCGGGGC CGTGGGCGCC
CGCGCCGGGC TGGTGGAATC CGCCGACGGC GGCACCCTGT TCCTTGACGA GATCGGCGAA
CTGCCTCAGC AGGCGCAGGG GCGACTGCTG CGCGTGCTGC AGGAGGGGGA GATCCGGCGC
ATCGGTTCGA CCCACGCCCG ACGGGTCAAC ATCCGCCTGG TGGCCGCCAC CCACCGCGAC
CTCAAGAGCC TCGCCAGCGC CGGTGAGTTC CGCGAGGATC TGTTCTTCCG CATCAACGTC
ATGGAGATCC GCCTGCCCCC GGTCCGCGAA CGCGAGGCGG ACATCCCGGA ACTCGCGCGC
TTCCTGCTCG AAAAGGCGTG CCAAAGGCTC AACCGCGCAC CCCTGGAGCT CTCCCGGGCG
GCCATCGACG CCATGACGGC CTACCCGTGG CCCGGCAACG TGCGCGAGAT GGAGAACACC
ATCGAGCGGG CCGTAATCCT CAGCGAGGGC AGCACCATCT CTCCGGACAT GCTGGGCCTG
CCGGCCGGCG AAAGCGCCCC GTCCGGCACC ACGAGCGGCC CCACCGCCGA GGCCGACGCA
GGCCCGCGTC AGGACCTGTC CCTGGAGGAC TATTTCCGCC AGTATGTGCT TACCCATCAG
GACCACATGA CGGAGACCGC CCTGGCCCGT GGGCTGGGCA TCAGCCGCAA GGCGCTGTGG
GAGAAACGGC AGCGCCACGG GATCCCGCGG CCGGGTAACA ACCGGACCTA A
|
|---|
| Protein sequence | MADLLLLEDE AVIRKALDRL LSRHGYSVHQ ADSLEQAQER WNLDAFDLIL ADMRLPGEPG
TEAIGRTAAP VIIMTSYASV QSAVEAMRQG AADYIAKPFD HDELLLLVER TLKEGRLQRQ
NAALKAHIER DYPVTGIVGN CEAMQKVFER IRKVAPTDTS VLILGESGTG KELVARALHE
QSERHEGPLV AVNCAAIPDG LIEAELFGHE RGAFTGAVGA RAGLVESADG GTLFLDEIGE
LPQQAQGRLL RVLQEGEIRR IGSTHARRVN IRLVAATHRD LKSLASAGEF REDLFFRINV
MEIRLPPVRE READIPELAR FLLEKACQRL NRAPLELSRA AIDAMTAYPW PGNVREMENT
IERAVILSEG STISPDMLGL PAGESAPSGT TSGPTAEADA GPRQDLSLED YFRQYVLTHQ
DHMTETALAR GLGISRKALW EKRQRHGIPR PGNNRT
|
|---|
| |