More than 300 homologs were found in PanDaTox collection
for query gene RPC_4673 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6734  methyl-accepting chemotaxis receptor (MCP)  66.62 
 
 
650 aa  776    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.221073  normal 
 
 
-
 
NC_007925  RPC_4673  methyl-accepting chemotaxis sensory transducer  100 
 
 
640 aa  1263    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7836  methyl-accepting chemotaxis receptor (MCP)  63.89 
 
 
609 aa  708    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.518607  normal  0.95176 
 
 
-
 
NC_007925  RPC_4674  methyl-accepting chemotaxis sensory transducer  72.19 
 
 
734 aa  619  1e-176  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1403  methyl-accepting chemotaxis sensory transducer  53.68 
 
 
637 aa  581  1e-164  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3261  methyl-accepting chemotaxis sensory transducer  54.42 
 
 
640 aa  564  1.0000000000000001e-159  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.444549 
 
 
-
 
NC_012850  Rleg_3560  methyl-accepting chemotaxis sensory transducer  53.67 
 
 
640 aa  553  1e-156  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.521589  normal  0.347271 
 
 
-
 
NC_007925  RPC_4671  methyl-accepting chemotaxis sensory transducer  86.09 
 
 
691 aa  527  1e-148  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0142  methyl-accepting chemotaxis sensory transducer  65.03 
 
 
733 aa  523  1e-147  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.134985  n/a   
 
 
-
 
NC_009485  BBta_6733  putative methyl-accepting chemotaxis protein  60.7 
 
 
738 aa  511  1e-143  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.556647  normal 
 
 
-
 
NC_007643  Rru_A1404  chemotaxis sensory transducer  50.31 
 
 
611 aa  489  1e-137  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.011031  n/a   
 
 
-
 
NC_011989  Avi_4313  methyl-accepting chemotaxis protein  53.12 
 
 
642 aa  476  1e-133  Agrobacterium vitis S4  Bacteria  normal  0.7654  n/a   
 
 
-
 
NC_012850  Rleg_3559  methyl-accepting chemotaxis sensory transducer  51.13 
 
 
602 aa  470  1.0000000000000001e-131  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.495549  normal  0.432808 
 
 
-
 
NC_011369  Rleg2_3260  methyl-accepting chemotaxis sensory transducer  49.32 
 
 
602 aa  466  9.999999999999999e-131  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0582253  normal  0.204929 
 
 
-
 
NC_010505  Mrad2831_4817  methyl-accepting chemotaxis sensory transducer  58.39 
 
 
747 aa  456  1e-127  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00849638 
 
 
-
 
NC_011989  Avi_4312  methyl-accepting chemotaxis protein  47.1 
 
 
606 aa  443  1e-123  Agrobacterium vitis S4  Bacteria  normal  0.623028  n/a   
 
 
-
 
NC_010338  Caul_0615  methyl-accepting chemotaxis sensory transducer  51.34 
 
 
599 aa  442  1e-123  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4672  methyl-accepting chemotaxis sensory transducer  47.89 
 
 
693 aa  436  1e-121  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7320  methyl-accepting chemotaxis protein  59.86 
 
 
774 aa  414  1e-114  Agrobacterium vitis S4  Bacteria  normal  0.364364  n/a   
 
 
-
 
NC_009485  BBta_7837  putative methyl-accepting chemotaxis protein (MCP)  72.6 
 
 
702 aa  411  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6735  methyl-accepting chemotaxis receptor (MCP)  70.66 
 
 
566 aa  405  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0787905  normal 
 
 
-
 
NC_010510  Mrad2831_5777  methyl-accepting chemotaxis sensory transducer  68.84 
 
 
705 aa  402  9.999999999999999e-111  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.807181  normal  0.137814 
 
 
-
 
NC_010338  Caul_0614  methyl-accepting chemotaxis sensory transducer  63.46 
 
 
560 aa  370  1e-101  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3262  methyl-accepting chemotaxis sensory transducer  63.82 
 
 
569 aa  367  1e-100  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.846629 
 
 
-
 
NC_012850  Rleg_3561  methyl-accepting chemotaxis sensory transducer  64.06 
 
 
569 aa  365  2e-99  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.216373 
 
 
-
 
NC_011989  Avi_4314  methyl-accepting chemotaxis protein  62.43 
 
 
564 aa  357  2.9999999999999997e-97  Agrobacterium vitis S4  Bacteria  normal  0.77703  n/a   
 
 
-
 
NC_008751  Dvul_1207  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
720 aa  355  2e-96  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.149931 
 
 
-
 
NC_012918  GM21_1294  methyl-accepting chemotaxis sensory transducer  39.2 
 
 
686 aa  354  2.9999999999999997e-96  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.66893e-19 
 
 
-
 
NC_007643  Rru_A1401  chemotaxis sensory transducer  61.41 
 
 
569 aa  353  5.9999999999999994e-96  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2647  methyl-accepting chemotaxis sensory transducer  57.35 
 
 
554 aa  347  3e-94  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.910941  n/a   
 
 
-
 
NC_011769  DvMF_0621  methyl-accepting chemotaxis sensory transducer  48.21 
 
 
727 aa  342  2e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0173671 
 
 
-
 
NC_013173  Dbac_1917  methyl-accepting chemotaxis sensory transducer  57.51 
 
 
677 aa  340  5.9999999999999996e-92  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.134066  n/a   
 
 
-
 
NC_011989  Avi_3947  methyl-accepting chemotaxis protein  60.51 
 
 
619 aa  338  1.9999999999999998e-91  Agrobacterium vitis S4  Bacteria  normal  0.412994  n/a   
 
 
-
 
NC_013173  Dbac_1421  methyl-accepting chemotaxis sensory transducer  58.09 
 
 
676 aa  337  3.9999999999999995e-91  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.45919  n/a   
 
 
-
 
NC_012918  GM21_2772  methyl-accepting chemotaxis sensory transducer  51.73 
 
 
735 aa  333  4e-90  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1482  methyl-accepting chemotaxis sensory transducer  51.04 
 
 
735 aa  332  1e-89  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1627  methyl-accepting chemotaxis sensory transducer  50.95 
 
 
733 aa  328  2.0000000000000001e-88  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.426202  n/a   
 
 
-
 
NC_008609  Ppro_1608  methyl-accepting chemotaxis sensory transducer  63.54 
 
 
558 aa  327  3e-88  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2477  methyl-accepting chemotaxis sensory transducer  48.47 
 
 
617 aa  327  4.0000000000000003e-88  Anaeromyxobacter sp. K  Bacteria  normal  0.200364  n/a   
 
 
-
 
NC_008609  Ppro_1601  methyl-accepting chemotaxis sensory transducer  54.4 
 
 
1500 aa  327  4.0000000000000003e-88  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2779  methyl-accepting chemotaxis sensory transducer  56.6 
 
 
566 aa  325  1e-87  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1140  methyl-accepting chemotaxis protein  50.49 
 
 
727 aa  323  6e-87  Geobacter sulfurreducens PCA  Bacteria  normal  0.664897  n/a   
 
 
-
 
NC_008609  Ppro_2710  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
969 aa  323  6e-87  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1209  methyl-accepting chemotaxis sensory transducer  55.26 
 
 
659 aa  318  2e-85  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.261932 
 
 
-
 
NC_011146  Gbem_2847  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  60.53 
 
 
1089 aa  318  2e-85  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000851175  n/a   
 
 
-
 
NC_002939  GSU1304  methyl-accepting chemotaxis protein  66.31 
 
 
566 aa  316  9.999999999999999e-85  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2424  methyl-accepting chemotaxis sensory transducer  55.32 
 
 
581 aa  315  9.999999999999999e-85  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1303  methyl-accepting chemotaxis protein  60.96 
 
 
494 aa  314  2.9999999999999996e-84  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3251  hypothetical protein  54.2 
 
 
552 aa  314  2.9999999999999996e-84  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.367816  normal  0.217501 
 
 
-
 
NC_011891  A2cp1_2573  methyl-accepting chemotaxis sensory transducer  38.78 
 
 
621 aa  314  2.9999999999999996e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.650368  n/a   
 
 
-
 
NC_009483  Gura_2985  methyl-accepting chemotaxis sensory transducer  56.7 
 
 
576 aa  314  3.9999999999999997e-84  Geobacter uraniireducens Rf4  Bacteria  normal  0.293775  n/a   
 
 
-
 
NC_009428  Rsph17025_1046  methyl-accepting chemotaxis sensory transducer  36.7 
 
 
551 aa  313  5.999999999999999e-84  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2542  methyl-accepting chemotaxis sensory transducer  51.48 
 
 
597 aa  313  7.999999999999999e-84  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_2423  methyl-accepting chemotaxis sensory transducer  49.45 
 
 
740 aa  311  2e-83  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1380  methyl-accepting chemotaxis sensory transducer  48 
 
 
608 aa  311  2.9999999999999997e-83  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.236828  n/a   
 
 
-
 
NC_002939  GSU1298  methyl-accepting chemotaxis protein  56.28 
 
 
568 aa  310  5e-83  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1735  methyl-accepting chemotaxis sensory transducer  52 
 
 
868 aa  308  1.0000000000000001e-82  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1300  methyl-accepting chemotaxis protein  58.14 
 
 
563 aa  308  2.0000000000000002e-82  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1366  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.88 
 
 
1088 aa  308  2.0000000000000002e-82  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000517956 
 
 
-
 
NC_007517  Gmet_2422  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.28 
 
 
1046 aa  307  3e-82  Geobacter metallireducens GS-15  Bacteria  normal  0.925436  normal 
 
 
-
 
NC_002939  GSU0683  methyl-accepting chemotaxis protein, putative  56.3 
 
 
568 aa  306  6e-82  Geobacter sulfurreducens PCA  Bacteria  normal  0.268569  n/a   
 
 
-
 
NC_012918  GM21_0949  methyl-accepting chemotaxis sensory transducer  58.2 
 
 
554 aa  302  1e-80  Geobacter sp. M21  Bacteria  n/a    normal  0.0219131 
 
 
-
 
NC_011146  Gbem_2944  methyl-accepting chemotaxis sensory transducer  49.88 
 
 
780 aa  302  1e-80  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2989  methyl-accepting chemotaxis sensory transducer  56.73 
 
 
1093 aa  302  1e-80  Geobacter uraniireducens Rf4  Bacteria  normal  0.653084  n/a   
 
 
-
 
NC_010814  Glov_1733  methyl-accepting chemotaxis sensory transducer  53.51 
 
 
823 aa  300  4e-80  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1294  methyl-accepting chemotaxis protein  55.39 
 
 
962 aa  300  6e-80  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1105  methyl-accepting chemotaxis sensory transducer  54.92 
 
 
563 aa  300  7e-80  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_1280  methyl-accepting chemotaxis sensory transducer  50.86 
 
 
1048 aa  300  7e-80  Geobacter sp. M21  Bacteria  n/a    normal  0.0818053 
 
 
-
 
NC_009483  Gura_1191  methyl-accepting chemotaxis sensory transducer  54.41 
 
 
846 aa  299  9e-80  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2945  methyl-accepting chemotaxis sensory transducer  49.51 
 
 
780 aa  298  1e-79  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2361  methyl-accepting chemotaxis sensory transducer  60.51 
 
 
652 aa  298  2e-79  Desulfovibrio vulgaris DP4  Bacteria  normal  0.128072  normal  0.188082 
 
 
-
 
NC_007493  RSP_2442  methyl accepting chemotaxis protein, McpB  52.25 
 
 
560 aa  297  3e-79  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.648609  n/a   
 
 
-
 
NC_009049  Rsph17029_1106  methyl-accepting chemotaxis sensory transducer  52.25 
 
 
560 aa  297  3e-79  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.809659 
 
 
-
 
NC_009431  Rsph17025_4246  hypothetical protein  51.44 
 
 
562 aa  297  4e-79  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.2464  normal  0.120296 
 
 
-
 
NC_007494  RSP_3708  methyl accepting chemotaxis protein  58.39 
 
 
553 aa  293  9e-78  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3443  methyl-accepting chemotaxis sensory transducer  58.39 
 
 
553 aa  293  9e-78  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0628443 
 
 
-
 
NC_012918  GM21_1108  methyl-accepting chemotaxis sensory transducer  51.13 
 
 
685 aa  291  2e-77  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2942  methyl-accepting chemotaxis sensory transducer  49.75 
 
 
1049 aa  292  2e-77  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1077  methyl-accepting chemotaxis sensory transducer  51.85 
 
 
690 aa  290  7e-77  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.317064  n/a   
 
 
-
 
NC_009483  Gura_2992  methyl-accepting chemotaxis sensory transducer  50.48 
 
 
733 aa  286  5e-76  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0950  methyl-accepting chemotaxis sensory transducer  59.49 
 
 
546 aa  286  5e-76  Geobacter sp. M21  Bacteria  n/a    normal  0.187483 
 
 
-
 
NC_008576  Mmc1_2401  methyl-accepting chemotaxis sensory transducer  46.24 
 
 
674 aa  286  5.999999999999999e-76  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.0000495749  normal  0.0928318 
 
 
-
 
NC_007494  RSP_3083  methyl accepting chemotaxis protein  47 
 
 
561 aa  284  3.0000000000000004e-75  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.481742  n/a   
 
 
-
 
NC_009050  Rsph17029_3810  methyl-accepting chemotaxis sensory transducer  46.5 
 
 
561 aa  282  1e-74  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.296432 
 
 
-
 
NC_011146  Gbem_3297  methyl-accepting chemotaxis sensory transducer  53.94 
 
 
548 aa  282  2e-74  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3298  methyl-accepting chemotaxis sensory transducer  63.08 
 
 
553 aa  280  5e-74  Geobacter bemidjiensis Bem  Bacteria  normal  0.62981  n/a   
 
 
-
 
NC_012918  GM21_2421  methyl-accepting chemotaxis sensory transducer  53.94 
 
 
816 aa  277  4e-73  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009429  Rsph17025_3891  hypothetical protein  47.65 
 
 
551 aa  275  1.0000000000000001e-72  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.452082 
 
 
-
 
NC_007760  Adeh_3897  methyl-accepting chemotaxis sensory transducer  50.34 
 
 
551 aa  275  3e-72  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.198365  n/a   
 
 
-
 
NC_007954  Sden_3297  chemotaxis sensory transducer  52.14 
 
 
543 aa  275  3e-72  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1826  methyl-accepting chemotaxis sensory transducer  62.36 
 
 
835 aa  275  3e-72  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0628  methyl-accepting chemotaxis sensory transducer  54.77 
 
 
675 aa  274  4.0000000000000004e-72  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3308  methyl-accepting chemotaxis sensory transducer  55.93 
 
 
682 aa  273  8.000000000000001e-72  Magnetococcus sp. MC-1  Bacteria  normal  0.785168  normal 
 
 
-
 
NC_007519  Dde_2159  methyl-accepting chemotaxis sensory transducer  58.66 
 
 
561 aa  272  1e-71  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.182871  n/a   
 
 
-
 
NC_007908  Rfer_0902  methyl-accepting chemotaxis sensory transducer  50.96 
 
 
550 aa  272  1e-71  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3998  methyl-accepting chemotaxis sensory transducer  50.88 
 
 
550 aa  270  5e-71  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4039  methyl-accepting chemotaxis sensory transducer  50.88 
 
 
551 aa  270  5e-71  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3303  putative methyl accepting chemotaxis protein, McpG  54.12 
 
 
534 aa  268  2e-70  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.627808  n/a   
 
 
-
 
NC_009050  Rsph17029_4036  methyl-accepting chemotaxis sensory transducer  53.76 
 
 
534 aa  267  4e-70  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0912  methyl-accepting chemotaxis protein  45.04 
 
 
551 aa  266  1e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
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