More than 300 homologs were found in PanDaTox collection
for query gene Rpal_0142 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_7837  putative methyl-accepting chemotaxis protein (MCP)  61.76 
 
 
702 aa  810    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0142  methyl-accepting chemotaxis sensory transducer  100 
 
 
733 aa  1442    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.134985  n/a   
 
 
-
 
NC_007925  RPC_4671  methyl-accepting chemotaxis sensory transducer  54.57 
 
 
691 aa  670    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4674  methyl-accepting chemotaxis sensory transducer  59.57 
 
 
734 aa  736    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6733  putative methyl-accepting chemotaxis protein  59.46 
 
 
738 aa  777    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.556647  normal 
 
 
-
 
NC_007925  RPC_4672  methyl-accepting chemotaxis sensory transducer  53.99 
 
 
693 aa  628  1e-178  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7836  methyl-accepting chemotaxis receptor (MCP)  76.87 
 
 
609 aa  606  9.999999999999999e-173  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.518607  normal  0.95176 
 
 
-
 
NC_007925  RPC_4673  methyl-accepting chemotaxis sensory transducer  67.39 
 
 
640 aa  594  1e-168  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6734  methyl-accepting chemotaxis receptor (MCP)  68.09 
 
 
650 aa  564  1.0000000000000001e-159  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.221073  normal 
 
 
-
 
NC_010505  Mrad2831_4817  methyl-accepting chemotaxis sensory transducer  48.87 
 
 
747 aa  509  1e-143  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00849638 
 
 
-
 
NC_009485  BBta_6735  methyl-accepting chemotaxis receptor (MCP)  67.39 
 
 
566 aa  489  1e-137  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0787905  normal 
 
 
-
 
NC_007643  Rru_A1403  methyl-accepting chemotaxis sensory transducer  54.85 
 
 
637 aa  483  1e-135  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1404  chemotaxis sensory transducer  57.78 
 
 
611 aa  469  9.999999999999999e-131  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.011031  n/a   
 
 
-
 
NC_012850  Rleg_3559  methyl-accepting chemotaxis sensory transducer  58.87 
 
 
602 aa  458  1e-127  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.495549  normal  0.432808 
 
 
-
 
NC_011369  Rleg2_3261  methyl-accepting chemotaxis sensory transducer  54.71 
 
 
640 aa  455  1.0000000000000001e-126  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.444549 
 
 
-
 
NC_012850  Rleg_3560  methyl-accepting chemotaxis sensory transducer  57.39 
 
 
640 aa  452  1e-125  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.521589  normal  0.347271 
 
 
-
 
NC_010338  Caul_0615  methyl-accepting chemotaxis sensory transducer  58.38 
 
 
599 aa  445  1e-123  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4312  methyl-accepting chemotaxis protein  61.9 
 
 
606 aa  437  1e-121  Agrobacterium vitis S4  Bacteria  normal  0.623028  n/a   
 
 
-
 
NC_010510  Mrad2831_5777  methyl-accepting chemotaxis sensory transducer  62.22 
 
 
705 aa  434  1e-120  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.807181  normal  0.137814 
 
 
-
 
NC_011369  Rleg2_3260  methyl-accepting chemotaxis sensory transducer  55.94 
 
 
602 aa  430  1e-119  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0582253  normal  0.204929 
 
 
-
 
NC_007643  Rru_A1401  chemotaxis sensory transducer  51.84 
 
 
569 aa  407  1.0000000000000001e-112  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7320  methyl-accepting chemotaxis protein  71.79 
 
 
774 aa  406  1.0000000000000001e-112  Agrobacterium vitis S4  Bacteria  normal  0.364364  n/a   
 
 
-
 
NC_011989  Avi_4313  methyl-accepting chemotaxis protein  53.82 
 
 
642 aa  397  1e-109  Agrobacterium vitis S4  Bacteria  normal  0.7654  n/a   
 
 
-
 
NC_010338  Caul_0614  methyl-accepting chemotaxis sensory transducer  52.16 
 
 
560 aa  395  1e-108  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3561  methyl-accepting chemotaxis sensory transducer  57.11 
 
 
569 aa  374  1e-102  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.216373 
 
 
-
 
NC_011989  Avi_4314  methyl-accepting chemotaxis protein  54.69 
 
 
564 aa  368  1e-100  Agrobacterium vitis S4  Bacteria  normal  0.77703  n/a   
 
 
-
 
NC_011369  Rleg2_3262  methyl-accepting chemotaxis sensory transducer  70 
 
 
569 aa  362  1e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.846629 
 
 
-
 
NC_008609  Ppro_1601  methyl-accepting chemotaxis sensory transducer  54.71 
 
 
1500 aa  361  2e-98  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2647  methyl-accepting chemotaxis sensory transducer  57.59 
 
 
554 aa  357  2.9999999999999997e-97  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.910941  n/a   
 
 
-
 
NC_013173  Dbac_1421  methyl-accepting chemotaxis sensory transducer  55.58 
 
 
676 aa  357  5e-97  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.45919  n/a   
 
 
-
 
NC_011145  AnaeK_2477  methyl-accepting chemotaxis sensory transducer  53.54 
 
 
617 aa  353  5e-96  Anaeromyxobacter sp. K  Bacteria  normal  0.200364  n/a   
 
 
-
 
NC_013173  Dbac_1917  methyl-accepting chemotaxis sensory transducer  59.77 
 
 
677 aa  353  5.9999999999999994e-96  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.134066  n/a   
 
 
-
 
NC_011891  A2cp1_2573  methyl-accepting chemotaxis sensory transducer  53.54 
 
 
621 aa  351  3e-95  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.650368  n/a   
 
 
-
 
NC_007760  Adeh_1380  methyl-accepting chemotaxis sensory transducer  56.01 
 
 
608 aa  348  3e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.236828  n/a   
 
 
-
 
NC_010814  Glov_1735  methyl-accepting chemotaxis sensory transducer  52.78 
 
 
868 aa  342  1e-92  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2779  methyl-accepting chemotaxis sensory transducer  51.4 
 
 
566 aa  342  2e-92  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1608  methyl-accepting chemotaxis sensory transducer  62.8 
 
 
558 aa  340  4e-92  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1140  methyl-accepting chemotaxis protein  54.17 
 
 
727 aa  339  9.999999999999999e-92  Geobacter sulfurreducens PCA  Bacteria  normal  0.664897  n/a   
 
 
-
 
NC_009429  Rsph17025_3251  hypothetical protein  47.63 
 
 
552 aa  338  2.9999999999999997e-91  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.367816  normal  0.217501 
 
 
-
 
NC_002939  GSU1304  methyl-accepting chemotaxis protein  56.06 
 
 
566 aa  337  5.999999999999999e-91  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2710  methyl-accepting chemotaxis sensory transducer  53.53 
 
 
969 aa  333  9e-90  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3947  methyl-accepting chemotaxis protein  56.38 
 
 
619 aa  332  2e-89  Agrobacterium vitis S4  Bacteria  normal  0.412994  n/a   
 
 
-
 
NC_010814  Glov_1733  methyl-accepting chemotaxis sensory transducer  57.62 
 
 
823 aa  332  2e-89  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2423  methyl-accepting chemotaxis sensory transducer  56.43 
 
 
740 aa  331  3e-89  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3443  methyl-accepting chemotaxis sensory transducer  52.19 
 
 
553 aa  327  7e-88  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0628443 
 
 
-
 
NC_002939  GSU1294  methyl-accepting chemotaxis protein  57.8 
 
 
962 aa  326  8.000000000000001e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1046  methyl-accepting chemotaxis sensory transducer  44.9 
 
 
551 aa  326  1e-87  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3708  methyl accepting chemotaxis protein  52.69 
 
 
553 aa  326  1e-87  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2422  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  53.99 
 
 
1046 aa  325  1e-87  Geobacter metallireducens GS-15  Bacteria  normal  0.925436  normal 
 
 
-
 
NC_011146  Gbem_1482  methyl-accepting chemotaxis sensory transducer  56.62 
 
 
735 aa  323  7e-87  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1294  methyl-accepting chemotaxis sensory transducer  57.86 
 
 
686 aa  322  9.999999999999999e-87  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.66893e-19 
 
 
-
 
NC_002939  GSU1300  methyl-accepting chemotaxis protein  57.26 
 
 
563 aa  322  1.9999999999999998e-86  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2772  methyl-accepting chemotaxis sensory transducer  57.46 
 
 
735 aa  321  3e-86  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2944  methyl-accepting chemotaxis sensory transducer  56.18 
 
 
780 aa  321  3.9999999999999996e-86  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1105  methyl-accepting chemotaxis sensory transducer  51.07 
 
 
563 aa  320  5e-86  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU1303  methyl-accepting chemotaxis protein  61.36 
 
 
494 aa  320  6e-86  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2945  methyl-accepting chemotaxis sensory transducer  51.74 
 
 
780 aa  320  9e-86  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0949  methyl-accepting chemotaxis sensory transducer  53.49 
 
 
554 aa  320  9e-86  Geobacter sp. M21  Bacteria  n/a    normal  0.0219131 
 
 
-
 
NC_009483  Gura_2985  methyl-accepting chemotaxis sensory transducer  48.75 
 
 
576 aa  319  1e-85  Geobacter uraniireducens Rf4  Bacteria  normal  0.293775  n/a   
 
 
-
 
NC_008751  Dvul_1207  methyl-accepting chemotaxis sensory transducer  44.25 
 
 
720 aa  317  6e-85  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.149931 
 
 
-
 
NC_011146  Gbem_2942  methyl-accepting chemotaxis sensory transducer  51.8 
 
 
1049 aa  316  9.999999999999999e-85  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1209  methyl-accepting chemotaxis sensory transducer  61.54 
 
 
659 aa  316  9.999999999999999e-85  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.261932 
 
 
-
 
NC_011769  DvMF_2542  methyl-accepting chemotaxis sensory transducer  51.68 
 
 
597 aa  315  1.9999999999999998e-84  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_0621  methyl-accepting chemotaxis sensory transducer  47.34 
 
 
727 aa  315  1.9999999999999998e-84  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0173671 
 
 
-
 
NC_009049  Rsph17029_1106  methyl-accepting chemotaxis sensory transducer  42.09 
 
 
560 aa  315  2.9999999999999996e-84  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.809659 
 
 
-
 
NC_007493  RSP_2442  methyl accepting chemotaxis protein, McpB  42.09 
 
 
560 aa  315  2.9999999999999996e-84  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.648609  n/a   
 
 
-
 
NC_007494  RSP_3083  methyl accepting chemotaxis protein  45.09 
 
 
561 aa  315  2.9999999999999996e-84  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.481742  n/a   
 
 
-
 
NC_012918  GM21_1280  methyl-accepting chemotaxis sensory transducer  52.06 
 
 
1048 aa  314  2.9999999999999996e-84  Geobacter sp. M21  Bacteria  n/a    normal  0.0818053 
 
 
-
 
NC_009050  Rsph17029_3810  methyl-accepting chemotaxis sensory transducer  44.62 
 
 
561 aa  313  5.999999999999999e-84  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.296432 
 
 
-
 
NC_002939  GSU1298  methyl-accepting chemotaxis protein  59.7 
 
 
568 aa  311  4e-83  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0683  methyl-accepting chemotaxis protein, putative  58.81 
 
 
568 aa  309  1.0000000000000001e-82  Geobacter sulfurreducens PCA  Bacteria  normal  0.268569  n/a   
 
 
-
 
NC_007517  Gmet_2424  methyl-accepting chemotaxis sensory transducer  65.74 
 
 
581 aa  308  3e-82  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1191  methyl-accepting chemotaxis sensory transducer  54.87 
 
 
846 aa  308  3e-82  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1366  methyl-accepting chemotaxis sensory transducer with Cache sensor  53.13 
 
 
1088 aa  307  5.0000000000000004e-82  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000517956 
 
 
-
 
NC_009483  Gura_2989  methyl-accepting chemotaxis sensory transducer  59.63 
 
 
1093 aa  306  1.0000000000000001e-81  Geobacter uraniireducens Rf4  Bacteria  normal  0.653084  n/a   
 
 
-
 
NC_011146  Gbem_2847  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  59.08 
 
 
1089 aa  306  1.0000000000000001e-81  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000851175  n/a   
 
 
-
 
NC_008751  Dvul_2361  methyl-accepting chemotaxis sensory transducer  58.67 
 
 
652 aa  306  1.0000000000000001e-81  Desulfovibrio vulgaris DP4  Bacteria  normal  0.128072  normal  0.188082 
 
 
-
 
NC_007519  Dde_1077  methyl-accepting chemotaxis sensory transducer  52.92 
 
 
690 aa  303  6.000000000000001e-81  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.317064  n/a   
 
 
-
 
NC_009483  Gura_2992  methyl-accepting chemotaxis sensory transducer  50.98 
 
 
733 aa  303  8.000000000000001e-81  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3298  methyl-accepting chemotaxis sensory transducer  54.37 
 
 
553 aa  300  6e-80  Geobacter bemidjiensis Bem  Bacteria  normal  0.62981  n/a   
 
 
-
 
NC_007519  Dde_1627  methyl-accepting chemotaxis sensory transducer  49.65 
 
 
733 aa  300  6e-80  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.426202  n/a   
 
 
-
 
NC_009429  Rsph17025_3891  hypothetical protein  41.67 
 
 
551 aa  299  1e-79  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.452082 
 
 
-
 
NC_009431  Rsph17025_4246  hypothetical protein  46.23 
 
 
562 aa  297  5e-79  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.2464  normal  0.120296 
 
 
-
 
NC_007760  Adeh_3897  methyl-accepting chemotaxis sensory transducer  53.33 
 
 
551 aa  297  5e-79  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.198365  n/a   
 
 
-
 
NC_012918  GM21_1108  methyl-accepting chemotaxis sensory transducer  55.29 
 
 
685 aa  295  1e-78  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_0950  methyl-accepting chemotaxis sensory transducer  54.86 
 
 
546 aa  295  2e-78  Geobacter sp. M21  Bacteria  n/a    normal  0.187483 
 
 
-
 
NC_011891  A2cp1_4039  methyl-accepting chemotaxis sensory transducer  53.98 
 
 
551 aa  291  4e-77  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3998  methyl-accepting chemotaxis sensory transducer  53.98 
 
 
550 aa  291  4e-77  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3297  methyl-accepting chemotaxis sensory transducer  61.38 
 
 
548 aa  288  2e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2401  methyl-accepting chemotaxis sensory transducer  55.68 
 
 
674 aa  288  2e-76  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.0000495749  normal  0.0928318 
 
 
-
 
NC_007519  Dde_2159  methyl-accepting chemotaxis sensory transducer  55.14 
 
 
561 aa  284  4.0000000000000003e-75  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.182871  n/a   
 
 
-
 
NC_007494  RSP_3303  putative methyl accepting chemotaxis protein, McpG  46.55 
 
 
534 aa  283  8.000000000000001e-75  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.627808  n/a   
 
 
-
 
NC_009050  Rsph17029_4036  methyl-accepting chemotaxis sensory transducer  46.26 
 
 
534 aa  281  2e-74  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0628  methyl-accepting chemotaxis sensory transducer  40.68 
 
 
675 aa  280  6e-74  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1143  histidine kinase, HAMP region: chemotaxis sensory transducer  44.92 
 
 
541 aa  280  8e-74  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0902  methyl-accepting chemotaxis sensory transducer  51.74 
 
 
550 aa  278  3e-73  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0912  methyl-accepting chemotaxis protein  46.48 
 
 
551 aa  278  4e-73  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0785  histidine kinase, HAMP region: chemotaxis sensory transducer  51.85 
 
 
551 aa  275  2.0000000000000002e-72  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.367078  normal 
 
 
-
 
NC_011146  Gbem_1826  methyl-accepting chemotaxis sensory transducer  59.52 
 
 
835 aa  275  2.0000000000000002e-72  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3297  chemotaxis sensory transducer  52.73 
 
 
543 aa  275  3e-72  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
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