More than 300 homologs were found in PanDaTox collection
for query gene Phep_3119 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013061  Phep_3119  helix-turn-helix- domain containing protein AraC type  100 
 
 
293 aa  608  1e-173  Pedobacter heparinus DSM 2366  Bacteria  hitchhiker  0.00676861  normal 
 
 
-
 
NC_009012  Cthe_2212  AraC family transcriptional regulator  26.22 
 
 
302 aa  91.3  2e-17  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0991  transcriptional regulator, AraC family  26.23 
 
 
276 aa  81.6  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4578  AraC family transcriptional regulator  37.1 
 
 
409 aa  81.3  0.00000000000002  Bacillus cereus E33L  Bacteria  normal  0.0591899  n/a   
 
 
-
 
NC_011658  BCAH187_A4969  transcriptional regulator, AraC family  37.4 
 
 
409 aa  80.5  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4562  AraC family transcriptional regulator  37.4 
 
 
409 aa  80.5  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00627934  n/a   
 
 
-
 
NC_011831  Cagg_2054  two component transcriptional regulator, AraC family  39.39 
 
 
1201 aa  80.1  0.00000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.695732  normal 
 
 
-
 
NC_011661  Dtur_1596  transcriptional regulator, AraC family  24.91 
 
 
287 aa  79.7  0.00000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2134  AraC protein, arabinose-binding/dimerisation  23.28 
 
 
306 aa  79  0.00000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3115  helix-turn-helix domain-containing protein  36.13 
 
 
412 aa  78.6  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1573  transcriptional regulator MmsR  24.81 
 
 
297 aa  78.2  0.0000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_18110  transcriptional regulator MmsR  25.19 
 
 
307 aa  78.2  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B2788  transcriptional regulator, AraC family  31.08 
 
 
408 aa  78.2  0.0000000000002  Bacillus cereus G9842  Bacteria  hitchhiker  0.000435011  hitchhiker  0.0000000035636 
 
 
-
 
NC_010180  BcerKBAB4_5603  AraC family transcriptional regulator  36.54 
 
 
409 aa  77.8  0.0000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A2535  transcriptional regulator, AraC family  33.59 
 
 
408 aa  77.4  0.0000000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0125  transcriptional regulator, AraC family  26.56 
 
 
300 aa  77.4  0.0000000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0142  transcriptional regulator, AraC family  31.41 
 
 
760 aa  77.4  0.0000000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0071  transcriptional regulator, AraC family  39.58 
 
 
308 aa  76.6  0.0000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.462194  normal  0.509071 
 
 
-
 
NC_012034  Athe_2058  transcriptional regulator, AraC family  28.41 
 
 
286 aa  76.3  0.0000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2139  transcriptional regulator, AraC family  40.59 
 
 
282 aa  76.3  0.0000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.669919  n/a   
 
 
-
 
NC_012034  Athe_1627  transcriptional regulator, AraC family  26.36 
 
 
273 aa  75.9  0.0000000000008  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.00000116038  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2786  AraC family transcriptional regulator  36.07 
 
 
411 aa  75.1  0.000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.173826  n/a   
 
 
-
 
NC_013132  Cpin_3596  transcriptional regulator, AraC family  25.3 
 
 
301 aa  74.3  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000000994716  hitchhiker  0.0000611237 
 
 
-
 
NC_013061  Phep_2431  AraC protein arabinose-binding/dimerisation  28.85 
 
 
294 aa  74.7  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.690566  normal 
 
 
-
 
NC_011658  BCAH187_A3086  transcriptional regulator, AraC family  38.1 
 
 
296 aa  74.3  0.000000000002  Bacillus cereus AH187  Bacteria  normal  0.164604  n/a   
 
 
-
 
NC_008463  PA14_70530  AraC family transcriptional regulator  23.88 
 
 
266 aa  74.7  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.204165  normal 
 
 
-
 
NC_009656  PSPA7_6118  putative transcriptional regulator  24.03 
 
 
266 aa  73.6  0.000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0731  AraC family transcriptional regulator  25.1 
 
 
285 aa  73.6  0.000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.0743378  normal  0.147127 
 
 
-
 
NC_003909  BCE_3088  AraC family transcriptional regulator  38.1 
 
 
296 aa  72.8  0.000000000007  Bacillus cereus ATCC 10987  Bacteria  normal  0.530109  n/a   
 
 
-
 
NC_011830  Dhaf_2638  transcriptional regulator, AraC family  26.56 
 
 
282 aa  72.8  0.000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0276  helix-turn-helix domain-containing protein  37.76 
 
 
291 aa  72.8  0.000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0659  AraC family transcriptional regulator  25.1 
 
 
290 aa  72  0.00000000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1809  transcriptional regulator, AraC family  25.69 
 
 
273 aa  72  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000729156  n/a   
 
 
-
 
NC_012669  Bcav_0937  transcriptional regulator, AraC family  21.07 
 
 
291 aa  72  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.127184  normal 
 
 
-
 
NC_011773  BCAH820_3069  transcriptional regulator, AraC family  37.74 
 
 
296 aa  72  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_012857  Rpic12D_4645  transcriptional regulator, AraC family  34.62 
 
 
112 aa  71.6  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0412729 
 
 
-
 
NC_009656  PSPA7_4772  AraC family transcriptional regulator  23.4 
 
 
293 aa  72  0.00000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2634  AraC family transcriptional regulator  38.78 
 
 
204 aa  72  0.00000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00066  DNA-binding transcriptional dual regulator  23.83 
 
 
292 aa  70.9  0.00000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0066  DNA-binding transcriptional regulator AraC  23.83 
 
 
292 aa  70.9  0.00000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3593  DNA-binding transcriptional regulator AraC  23.83 
 
 
292 aa  70.9  0.00000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.50445  hitchhiker  0.000000316606 
 
 
-
 
CP001637  EcDH1_3535  transcriptional regulator, AraC family  23.83 
 
 
292 aa  70.9  0.00000000002  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0920  AraC family transcriptional regulator  28.57 
 
 
313 aa  71.6  0.00000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.0175793  n/a   
 
 
-
 
NC_011083  SeHA_C1218  4-hydroxyphenylacetate catabolism regulatory protein HpaA  22.76 
 
 
298 aa  71.2  0.00000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.398586  normal 
 
 
-
 
NC_010001  Cphy_3256  AraC family transcriptional regulator  21.13 
 
 
292 aa  71.2  0.00000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00065  hypothetical protein  23.83 
 
 
292 aa  70.9  0.00000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1203  4-hydroxyphenylacetate catabolism regulatory protein HpaA  22.76 
 
 
298 aa  71.2  0.00000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.375104 
 
 
-
 
NC_010678  Rpic_4513  transcriptional regulator, AraC family  34.62 
 
 
133 aa  70.9  0.00000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2836  AraC family transcriptional regulator  36.19 
 
 
296 aa  71.2  0.00000000002  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00254989  n/a   
 
 
-
 
NC_010001  Cphy_0572  AraC family transcriptional regulator  27.31 
 
 
300 aa  71.2  0.00000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_54610  putative transcriptional regulator  21.89 
 
 
303 aa  70.9  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.53981  normal  0.0153543 
 
 
-
 
NC_008527  LACR_1633  AraC family transcriptional regulator  37.5 
 
 
386 aa  71.2  0.00000000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2146  DNA-binding transcriptional regulator AraC  28.98 
 
 
316 aa  71.6  0.00000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1067  4-hydroxyphenylacetate catabolism regulatory protein HpaA  22.76 
 
 
298 aa  71.2  0.00000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0066  DNA-binding transcriptional regulator AraC  23.83 
 
 
281 aa  70.9  0.00000000002  Escherichia coli SMS-3-5  Bacteria  normal  0.269311  normal  0.445846 
 
 
-
 
NC_011094  SeSA_A1172  4-hydroxyphenylacetate catabolism regulatory protein HpaA  22.76 
 
 
298 aa  71.2  0.00000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.856893 
 
 
-
 
NC_009800  EcHS_A0068  DNA-binding transcriptional regulator AraC  23.83 
 
 
292 aa  70.9  0.00000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1183  4-hydroxyphenylacetate catabolism regulatory protein HpaA  22.76 
 
 
298 aa  71.2  0.00000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0056  DNA-binding transcriptional regulator AraC  23.83 
 
 
292 aa  70.9  0.00000000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0069  DNA-binding transcriptional regulator AraC  23.83 
 
 
309 aa  70.9  0.00000000003  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3053  transcriptional regulator, AraC family  37.14 
 
 
296 aa  70.5  0.00000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  32.11 
 
 
530 aa  70.9  0.00000000003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_008254  Meso_0577  AraC family transcriptional regulator  27.5 
 
 
313 aa  70.9  0.00000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2843  AraC family transcriptional regulator  37.14 
 
 
296 aa  70.5  0.00000000004  Bacillus anthracis str. Sterne  Bacteria  normal  0.538425  n/a   
 
 
-
 
NC_011149  SeAg_B4704  putative DNA-binding protein  22 
 
 
274 aa  70.1  0.00000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.0000153171  n/a   
 
 
-
 
NC_007530  GBAA_3057  AraC family transcriptional regulator  37.14 
 
 
296 aa  70.5  0.00000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.118978  n/a   
 
 
-
 
NC_014212  Mesil_1477  transcriptional regulator, AraC family  24.23 
 
 
278 aa  70.1  0.00000000004  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000537918  unclonable  0.00000296813 
 
 
-
 
NC_012858  Rleg_6879  transcriptional regulator, AraC family  29.63 
 
 
291 aa  70.1  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0489024  normal  0.393248 
 
 
-
 
NC_005957  BT9727_2816  AraC family transcriptional regulator  37.14 
 
 
296 aa  70.1  0.00000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK2776  AraC family transcriptional regulator  37.5 
 
 
296 aa  69.7  0.00000000005  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1402  transcriptional regulator, AraC family  24.33 
 
 
288 aa  70.1  0.00000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.283594  normal  0.8016 
 
 
-
 
NC_011366  Rleg2_5909  transcriptional regulator, AraC family  29.63 
 
 
291 aa  69.7  0.00000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.678896 
 
 
-
 
NC_011369  Rleg2_2907  transcriptional regulator, AraC family  35.11 
 
 
289 aa  69.7  0.00000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0560618  normal 
 
 
-
 
NC_009439  Pmen_4394  AraC family transcriptional regulator  23.55 
 
 
266 aa  69.3  0.00000000006  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.140673 
 
 
-
 
NC_007644  Moth_1205  AraC family transcriptional regulator  36.19 
 
 
440 aa  68.9  0.00000000008  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.909691  normal 
 
 
-
 
NC_013456  VEA_002640  transcriptional regulator AraC family  32.71 
 
 
241 aa  69.3  0.00000000008  Vibrio sp. Ex25  Bacteria  normal  0.632133  n/a   
 
 
-
 
NC_011725  BCB4264_A3127  transcriptional regulator, AraC family  36.84 
 
 
409 aa  68.9  0.00000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3327  AraC family transcriptional regulator  22.59 
 
 
279 aa  69.3  0.00000000008  Pseudomonas mendocina ymp  Bacteria  normal  0.414693  normal 
 
 
-
 
NC_007336  Reut_C5912  AraC family transcriptional regulator  35 
 
 
281 aa  68.9  0.00000000009  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1909  DNA-binding transcriptional regulator AraC  29.55 
 
 
314 aa  68.9  0.00000000009  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3840  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  34.31 
 
 
198 aa  68.9  0.00000000009  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2894  AraC family transcriptional regulator  36.84 
 
 
409 aa  68.6  0.0000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00223441  n/a   
 
 
-
 
NC_011729  PCC7424_1148  transcriptional regulator, AraC family  26.04 
 
 
309 aa  68.2  0.0000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  34.31 
 
 
513 aa  68.2  0.0000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B1459  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  33.33 
 
 
198 aa  68.6  0.0000000001  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000164097 
 
 
-
 
NC_011773  BCAH820_3148  transcriptional regulator, AraC family  36.84 
 
 
409 aa  68.6  0.0000000001  Bacillus cereus AH820  Bacteria  n/a    normal  0.322003 
 
 
-
 
NC_010676  Bphyt_6041  transcriptional regulator, AraC family  28.8 
 
 
303 aa  68.2  0.0000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.331066 
 
 
-
 
NC_008309  HS_0029  DNA-binding transcriptional regulator AraC  27.48 
 
 
242 aa  68.2  0.0000000001  Haemophilus somnus 129PT  Bacteria  normal  0.773429  n/a   
 
 
-
 
NC_009620  Smed_4138  AraC family transcriptional regulator  31.73 
 
 
311 aa  68.6  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B2110  transcriptional regulator, AraC family  36.84 
 
 
185 aa  68.2  0.0000000001  Bacillus cereus G9842  Bacteria  normal  0.695339  normal 
 
 
-
 
NC_009436  Ent638_0611  DNA-binding transcriptional regulator AraC  24.15 
 
 
280 aa  68.6  0.0000000001  Enterobacter sp. 638  Bacteria  normal  0.88985  normal  0.0110602 
 
 
-
 
NC_011772  BCG9842_B2193  transcriptional regulator, AraC family  35.24 
 
 
296 aa  68.6  0.0000000001  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000412725 
 
 
-
 
NC_009439  Pmen_2669  AraC family transcriptional regulator  36.7 
 
 
188 aa  68.6  0.0000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.588575  normal 
 
 
-
 
NC_009441  Fjoh_2943  helix-turn-helix domain-containing protein  32.08 
 
 
307 aa  68.2  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0314532  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3508  AraC family transcriptional regulator  35.29 
 
 
196 aa  68.2  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0210792  n/a   
 
 
-
 
NC_011988  Avi_5122  transcriptional regulator AraC family  31.48 
 
 
314 aa  68.2  0.0000000002  Agrobacterium vitis S4  Bacteria  normal  0.962416  n/a   
 
 
-
 
NC_006274  BCZK3497  AraC family transcriptional regulator  35.29 
 
 
198 aa  68.2  0.0000000002  Bacillus cereus E33L  Bacteria  normal  0.27794  n/a   
 
 
-
 
NC_007336  Reut_C6068  AraC family transcriptional regulator  30.08 
 
 
287 aa  68.2  0.0000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1537  transcriptional regulator, AraC family  32.67 
 
 
282 aa  67.8  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.164062  n/a   
 
 
-
 
NC_010465  YPK_1996  DNA-binding transcriptional regulator AraC  29.85 
 
 
310 aa  67.8  0.0000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
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