More than 300 homologs were found in PanDaTox collection
for query gene PC1_2836 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_2836  transcriptional regulator, AsnC family  100 
 
 
165 aa  330  4e-90  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5879  AsnC family transcriptional regulator  61.96 
 
 
186 aa  215  2.9999999999999998e-55  Sinorhizobium medicae WSM419  Bacteria  normal  0.0404576  normal 
 
 
-
 
NC_012850  Rleg_4616  transcriptional regulator, AsnC family  55.9 
 
 
175 aa  183  9e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.527388 
 
 
-
 
NC_007951  Bxe_A1396  AsnC family transcriptional regulator  53.1 
 
 
174 aa  164  4e-40  Burkholderia xenovorans LB400  Bacteria  normal  0.937128  normal  0.441206 
 
 
-
 
NC_010681  Bphyt_2726  transcriptional regulator, AsnC family  52.41 
 
 
174 aa  161  3e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0910  AsnC family transcriptional regulator  48.72 
 
 
179 aa  156  1e-37  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2359  transcriptional regulator, AsnC family  47.1 
 
 
167 aa  144  4.0000000000000006e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.307081  n/a   
 
 
-
 
NC_013595  Sros_9337  putative transcriptional regulator, AsnC family  47.26 
 
 
153 aa  132  3e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0632  AsnC family transcriptional regulator  42.36 
 
 
151 aa  122  2e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.134943 
 
 
-
 
NC_009380  Strop_0657  AsnC family transcriptional regulator  41.67 
 
 
151 aa  114  3.9999999999999997e-25  Salinispora tropica CNB-440  Bacteria  normal  normal  0.702777 
 
 
-
 
NC_013947  Snas_4632  transcriptional regulator, AsnC family  44.16 
 
 
166 aa  109  2.0000000000000002e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0402571 
 
 
-
 
NC_014151  Cfla_0777  transcriptional regulator, AsnC family  40.97 
 
 
156 aa  97.4  7e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5040  AsnC family transcriptional regulator  41.22 
 
 
152 aa  97.4  8e-20  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0166005 
 
 
-
 
NC_009380  Strop_4530  AsnC/Lrp family regulatory protein  40.54 
 
 
152 aa  93.2  2e-18  Salinispora tropica CNB-440  Bacteria  normal  normal  0.668495 
 
 
-
 
NC_013093  Amir_6708  transcriptional regulator, AsnC family  36.11 
 
 
153 aa  90.1  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  35.14 
 
 
163 aa  89.7  2e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_014165  Tbis_1813  AsnC family transcriptional regulator  38.89 
 
 
182 aa  87.8  5e-17  Thermobispora bispora DSM 43833  Bacteria  normal  0.401161  normal 
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.4  7e-17  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.4  7e-17  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.4  7e-17  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.4  7e-17  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.8  7e-17  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.4  7e-17  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_007963  Csal_1531  AsnC family transcriptional regulator  38.13 
 
 
165 aa  87.4  8e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1136  transcriptional regulator, AsnC family  34.27 
 
 
151 aa  87  9e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  36.11 
 
 
164 aa  87  9e-17  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87.4  9e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  35.81 
 
 
164 aa  87.4  9e-17  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87  1e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_009953  Sare_4510  AsnC family transcriptional regulator  36.99 
 
 
152 aa  86.7  1e-16  Salinispora arenicola CNS-205  Bacteria  normal  0.181997  hitchhiker  0.00650672 
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87  1e-16  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_013595  Sros_5843  putative transcriptional regulator, AsnC family  38.3 
 
 
158 aa  86.7  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.594324 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  35.1 
 
 
167 aa  86.7  1e-16  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  35.33 
 
 
164 aa  87  1e-16  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_013093  Amir_2259  transcriptional regulator, AsnC family  36.55 
 
 
149 aa  86.3  2e-16  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000534286  n/a   
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  34.42 
 
 
167 aa  86.3  2e-16  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  35.1 
 
 
167 aa  85.9  2e-16  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_011071  Smal_0443  transcriptional regulator, AsnC family  38.1 
 
 
159 aa  85.5  3e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  35.42 
 
 
164 aa  85.5  3e-16  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  35.42 
 
 
164 aa  85.1  4e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009380  Strop_4090  AsnC/Lrp family regulatory protein  36.3 
 
 
152 aa  85.1  4e-16  Salinispora tropica CNB-440  Bacteria  normal  normal  0.475727 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  34.42 
 
 
167 aa  85.1  4e-16  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_009439  Pmen_0244  AsnC family transcriptional regulator  37.59 
 
 
162 aa  84.7  5e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0818  transcriptional regulator, AsnC family  34.72 
 
 
152 aa  84.7  5e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  35.53 
 
 
167 aa  84.7  5e-16  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84.3  6e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84.3  6e-16  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84.3  6e-16  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84.3  6e-16  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84.3  6e-16  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_013037  Dfer_2044  transcriptional regulator, AsnC family  33.8 
 
 
158 aa  84.3  7e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.549903  normal 
 
 
-
 
NC_008025  Dgeo_0987  AsnC family transcriptional regulator  40 
 
 
153 aa  84.3  7e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.284235  normal  0.0873077 
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84  8e-16  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84  8e-16  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84  8e-16  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  34.21 
 
 
168 aa  84  8e-16  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_002947  PP_5271  leucine-responsive regulatory protein  36.42 
 
 
162 aa  83.6  0.000000000000001  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1115  AsnC family transcriptional regulator  39.57 
 
 
164 aa  83.6  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.266621 
 
 
-
 
NC_010322  PputGB1_5323  AsnC family transcriptional regulator  36.42 
 
 
162 aa  83.6  0.000000000000001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0644813 
 
 
-
 
NC_010623  Bphy_5406  AsnC family transcriptional regulator  37.5 
 
 
169 aa  83.2  0.000000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_5181  AsnC family transcriptional regulator  36.42 
 
 
162 aa  83.6  0.000000000000001  Pseudomonas putida F1  Bacteria  normal  0.73265  normal  0.0995684 
 
 
-
 
NC_010338  Caul_1045  AsnC family transcriptional regulator  38.13 
 
 
155 aa  83.2  0.000000000000001  Caulobacter sp. K31  Bacteria  normal  0.596576  normal  0.823935 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  33.12 
 
 
165 aa  83.6  0.000000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_010501  PputW619_0199  AsnC family transcriptional regulator  36.42 
 
 
162 aa  83.6  0.000000000000001  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00074926 
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  34.23 
 
 
164 aa  82.8  0.000000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  34.23 
 
 
164 aa  82.8  0.000000000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  34.23 
 
 
164 aa  82.8  0.000000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_013510  Tcur_2333  transcriptional regulator, AsnC family  37.86 
 
 
143 aa  82.4  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.073767  n/a   
 
 
-
 
NC_010676  Bphyt_5396  transcriptional regulator, AsnC family  36.73 
 
 
175 aa  82.8  0.000000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.1611  normal  0.0284366 
 
 
-
 
NC_009656  PSPA7_3259  putative transcriptional regulator  35 
 
 
157 aa  82.4  0.000000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0640404  n/a   
 
 
-
 
NC_007005  Psyr_0234  regulatory proteins, AsnC/Lrp  36.62 
 
 
162 aa  82.4  0.000000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4172  AsnC family transcriptional regulator  37.32 
 
 
147 aa  82.4  0.000000000000003  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.0000168558  normal  0.252141 
 
 
-
 
NC_004578  PSPTO_0100  leucine-responsive regulatory protein  36.62 
 
 
162 aa  81.6  0.000000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_03340  transcriptional regulator, AsnC family  38.93 
 
 
148 aa  82  0.000000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.672148 
 
 
-
 
NC_007492  Pfl01_5527  AsnC family transcriptional regulator  37.59 
 
 
162 aa  81.6  0.000000000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.414864 
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  32.47 
 
 
166 aa  81.6  0.000000000000004  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_013501  Rmar_2148  transcriptional regulator, AsnC family  35.1 
 
 
167 aa  81.6  0.000000000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0275  AsnC family transcriptional regulator  34.75 
 
 
156 aa  81.3  0.000000000000005  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5004  transcriptional regulator, AsnC family  37.75 
 
 
162 aa  81.3  0.000000000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.38701  n/a   
 
 
-
 
NC_007650  BTH_II1100  leucine-responsive regulatory protein, putative  37.67 
 
 
169 aa  80.9  0.000000000000007  Burkholderia thailandensis E264  Bacteria  normal  0.121035  n/a   
 
 
-
 
NC_013757  Gobs_4567  transcriptional regulator, AsnC family  37.5 
 
 
167 aa  80.9  0.000000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_38300  putative transcriptional regulator  34.29 
 
 
157 aa  80.9  0.000000000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0128903 
 
 
-
 
NC_008699  Noca_2660  AsnC family transcriptional regulator  38.19 
 
 
150 aa  80.9  0.000000000000008  Nocardioides sp. JS614  Bacteria  normal  0.0584883  n/a   
 
 
-
 
NC_002947  PP_5188  transcriptional regulator BkdR, putative  34.75 
 
 
156 aa  80.1  0.00000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.354058  normal 
 
 
-
 
NC_013441  Gbro_1645  Transcription regulator, AsnC-type-like protein  35.17 
 
 
148 aa  80.5  0.00000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0557  AsnC family transcriptional regulator  31.29 
 
 
156 aa  80.5  0.00000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03072  leucine responsive regulatory protein  36.36 
 
 
159 aa  80.5  0.00000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_5095  AsnC family transcriptional regulator  34.75 
 
 
156 aa  80.1  0.00000000000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_2941  transcriptional regulator, AsnC family  37.06 
 
 
158 aa  80.1  0.00000000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000077861  hitchhiker  0.000100592 
 
 
-
 
NC_010322  PputGB1_5248  AsnC family transcriptional regulator  34.75 
 
 
156 aa  80.5  0.00000000000001  Pseudomonas putida GB-1  Bacteria  normal  0.58536  normal 
 
 
-
 
NC_012918  GM21_1356  transcriptional regulator, AsnC family  35.92 
 
 
154 aa  79.3  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    decreased coverage  7.272090000000001e-29 
 
 
-
 
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