More than 300 homologs were found in PanDaTox collection
for query gene Krad_0116 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_0116  binding-protein-dependent transport systems inner membrane component  100 
 
 
317 aa  621  1e-177  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.156333  normal  0.563407 
 
 
-
 
NC_012669  Bcav_3622  binding-protein-dependent transport systems inner membrane component  65.25 
 
 
309 aa  385  1e-106  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.049937  normal  0.069127 
 
 
-
 
NC_012854  Rleg_6533  binding-protein-dependent transport systems inner membrane component  65.61 
 
 
292 aa  385  1e-106  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.824779  normal  0.0156091 
 
 
-
 
NC_011368  Rleg2_5607  binding-protein-dependent transport systems inner membrane component  65.62 
 
 
292 aa  384  1e-105  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.153616  normal 
 
 
-
 
NC_012669  Bcav_3614  binding-protein-dependent transport systems inner membrane component  57.89 
 
 
287 aa  331  1e-89  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.484603  normal  0.727796 
 
 
-
 
NC_012669  Bcav_3676  binding-protein-dependent transport systems inner membrane component  39.74 
 
 
309 aa  179  5.999999999999999e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
316 aa  174  1.9999999999999998e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  35.05 
 
 
307 aa  173  2.9999999999999996e-42  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  35.05 
 
 
307 aa  173  2.9999999999999996e-42  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  32.62 
 
 
310 aa  172  5e-42  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  36.81 
 
 
310 aa  171  2e-41  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1946  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
320 aa  170  3e-41  Arthrobacter sp. FB24  Bacteria  normal  0.305055  n/a   
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  36.96 
 
 
319 aa  169  5e-41  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_009504  BOV_A1085  putative sugar ABC transporter, permease protein  36.96 
 
 
319 aa  169  5e-41  Brucella ovis ATCC 25840  Bacteria  normal  0.589946  n/a   
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  37.55 
 
 
314 aa  166  2.9999999999999998e-40  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  37.55 
 
 
314 aa  166  2.9999999999999998e-40  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4890  sugar transport system (permease)  39.02 
 
 
284 aa  167  2.9999999999999998e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.096709  normal  0.1595 
 
 
-
 
NC_008261  CPF_1114  sugar ABC transporter, permease protein  35.62 
 
 
301 aa  164  1.0000000000000001e-39  Clostridium perfringens ATCC 13124  Bacteria  normal  0.212611  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  34.81 
 
 
319 aa  164  2.0000000000000002e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1530  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
295 aa  162  5.0000000000000005e-39  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  37.23 
 
 
292 aa  162  9e-39  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  35.59 
 
 
305 aa  162  9e-39  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1092  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
291 aa  160  2e-38  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_31530  carbohydrate ABC transporter membrane protein  33.33 
 
 
313 aa  159  6e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.68002  normal 
 
 
-
 
NC_013530  Xcel_2913  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
299 aa  159  7e-38  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
292 aa  157  2e-37  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
307 aa  157  3e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
290 aa  157  3e-37  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  35 
 
 
306 aa  156  4e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0896  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
314 aa  156  5.0000000000000005e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17142  normal  0.200389 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
328 aa  156  6e-37  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_009664  Krad_0295  binding-protein-dependent transport systems inner membrane component  35.67 
 
 
306 aa  155  6e-37  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
309 aa  155  6e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  34.72 
 
 
321 aa  154  2.9999999999999998e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  36.1 
 
 
314 aa  153  4e-36  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
312 aa  153  5e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  34.51 
 
 
310 aa  151  1e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2071  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
345 aa  150  2e-35  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.0000672298  normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
318 aa  150  2e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_012669  Bcav_2718  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
330 aa  150  3e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.21265 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
318 aa  150  3e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
320 aa  150  4e-35  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_012669  Bcav_2833  binding-protein-dependent transport systems inner membrane component  32.98 
 
 
319 aa  149  7e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0200859  normal 
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  30.84 
 
 
334 aa  149  8e-35  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_012669  Bcav_0146  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
292 aa  149  8e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0896196  normal 
 
 
-
 
NC_013172  Bfae_28370  carbohydrate ABC transporter membrane protein  32.99 
 
 
287 aa  148  1.0000000000000001e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  0.096742  n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
300 aa  148  1.0000000000000001e-34  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5026  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
296 aa  148  1.0000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0515819  normal  0.562108 
 
 
-
 
NC_012669  Bcav_1506  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
319 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.172357  normal 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
353 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
316 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
311 aa  147  3e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.14 
 
 
306 aa  147  3e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  32.36 
 
 
308 aa  147  3e-34  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1290  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
297 aa  146  4.0000000000000006e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
315 aa  145  6e-34  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_008541  Arth_2946  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
316 aa  146  6e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
313 aa  145  7.0000000000000006e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
306 aa  145  8.000000000000001e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_013739  Cwoe_4882  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
313 aa  145  8.000000000000001e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.115668  normal 
 
 
-
 
NC_008578  Acel_2048  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
332 aa  145  9e-34  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2820  binding-protein-dependent transport systems inner membrane component  36.63 
 
 
305 aa  144  1e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0238  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
329 aa  145  1e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.557491 
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
319 aa  144  2e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  30.57 
 
 
318 aa  144  2e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_011899  Hore_13130  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
293 aa  144  2e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
321 aa  144  2e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012792  Vapar_6266  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
320 aa  144  2e-33  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  35.34 
 
 
301 aa  144  2e-33  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012917  PC1_3522  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
331 aa  144  2e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  32.99 
 
 
288 aa  144  2e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_013947  Snas_2264  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
301 aa  144  3e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.415177  normal 
 
 
-
 
NC_012880  Dd703_0699  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
291 aa  143  3e-33  Dickeya dadantii Ech703  Bacteria  normal  0.216687  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  31.76 
 
 
321 aa  143  3e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  29.63 
 
 
354 aa  143  3e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_008541  Arth_3142  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
325 aa  143  3e-33  Arthrobacter sp. FB24  Bacteria  normal  0.406302  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
317 aa  143  3e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  33.1 
 
 
294 aa  143  3e-33  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3671  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
332 aa  143  4e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
306 aa  143  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0715  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
333 aa  143  4e-33  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2484  binding-protein-dependent transport systems inner membrane component  28.89 
 
 
318 aa  142  5e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.575298  n/a   
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  32.75 
 
 
294 aa  143  5e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
294 aa  143  5e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
289 aa  142  6e-33  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
294 aa  142  6e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  35.35 
 
 
289 aa  141  9.999999999999999e-33  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  35.4 
 
 
316 aa  141  9.999999999999999e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
308 aa  142  9.999999999999999e-33  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  29.82 
 
 
312 aa  141  9.999999999999999e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  33.57 
 
 
300 aa  141  9.999999999999999e-33  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
299 aa  141  9.999999999999999e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
297 aa  141  9.999999999999999e-33  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  33.45 
 
 
320 aa  141  9.999999999999999e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
291 aa  141  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0627  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
294 aa  140  1.9999999999999998e-32  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.0000000558297  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  36.95 
 
 
289 aa  140  1.9999999999999998e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  32.57 
 
 
312 aa  140  1.9999999999999998e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2658  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
309 aa  140  3e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.43514  n/a   
 
 
-
 
NC_012669  Bcav_2702  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
299 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.573437  normal  0.482713 
 
 
-
 
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