| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6266 |
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| Symbol | |
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| ID | 7975482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1004992 |
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| End bp | 1005954 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796836 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002948095 |
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| Protein GI | 239820910 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGATC CTTCTTCCGG CGTCGCAGCG GCGATGCGCC GCACGCTCGC CTCCTGGCTT
TCGGCGCCGG AGGCCGACTC CCGGCGCGCT TCGCTGCCCA CCGTGATGCT GTTCCTCGCG
CCGGCATTGC TCGTGTATGC GGCCTTGACG GCCTATCCGG TGCTGCGCAC CTTCTACAAC
AGCTTCTTCA ACGTGGCCGA CCTGGCCTCG TCGGAGTTCG TCGGCTGGGC CCACTATGCC
GAGGTCTTCA AGGACAGGAC TTTCTGGGCG GCGGTGCGCA ACACCGCCGC CTGGTCGGTC
ATCGGACCCA TCCTCGACGT GGTGGTCGGG CTGCTGCTTG CGCTGTGCCT GTACGCCGGC
GTGCCGTTCT CGCGCTTCCT GCGCGTGGCG TGGTTCACGC CCGTGCTGCT GTCCTATGTG
GTGGTGGGGA TCATGTGGGT CTGGATCTAC AACTACGACT GGGGCGTCGT GAACGGCATG
CTGCGCGCCA TGGGGCTCGA GAGCTGGGCG CAGGCCTGGC TGGGCGACCC GCGGTTCGCG
CTAGGCTCGC TGATCGTGAC CCATGCCTGG AAGTGGGCAG GCTTCAACAT GGTCGTTTGC
CTGGCCGCGC TGCATTCGCT GCCGTCGGAG GTGCTCGAGG CCGCCGAGCT CGACAACTGC
GGCTGGTGGC ACAAGCTCAC CGACATCATC GTGCCCATGC TCTGGCCGAC CTTGCTCAAC
CTCTACATCC TTGCCTTCAT CGGCAAGATG AAAGTCTTCG ACCTGGTCTG GATCATGACC
GAGGGCGGCC CGGTGTGGTC AACCGAAACG GTGTCGACCT ATGTGTACAA GCGGGCCTTC
AACTGGAACA CCTTCGACCT CGGCTATCCC TCGGCGATTG CCGTGGTGTG GTTCTTCGTG
GTGGTCGGCT TCGTCGTCTT CTTCAACCTG CTGTTCCGTC GCCGCGAGCG CATGGAGTAC
TGA
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| Protein sequence | MTDPSSGVAA AMRRTLASWL SAPEADSRRA SLPTVMLFLA PALLVYAALT AYPVLRTFYN
SFFNVADLAS SEFVGWAHYA EVFKDRTFWA AVRNTAAWSV IGPILDVVVG LLLALCLYAG
VPFSRFLRVA WFTPVLLSYV VVGIMWVWIY NYDWGVVNGM LRAMGLESWA QAWLGDPRFA
LGSLIVTHAW KWAGFNMVVC LAALHSLPSE VLEAAELDNC GWWHKLTDII VPMLWPTLLN
LYILAFIGKM KVFDLVWIMT EGGPVWSTET VSTYVYKRAF NWNTFDLGYP SAIAVVWFFV
VVGFVVFFNL LFRRRERMEY
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