More than 300 homologs were found in PanDaTox collection
for query gene Franean1_7218 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009921  Franean1_7218  winged helix family two component response transcriptional regulator  100 
 
 		 124 aa  247  4e-65  Frankia sp. EAN1pec  Bacteria  normal  0.18436  normal  1 
 
 
-
 
NC_007777  Francci3_0089  response regulator receiver protein  62.5 
 
 		 171 aa  120  5e-27  Frankia sp. CcI3  Bacteria  normal  0.68554  normal  1 
 
 
-
 
NC_013947  Snas_6372  putative two component transcriptional regulator, winged helix family  47.66 
 
 		 236 aa  91.7  3e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_3035  putative two component transcriptional regulator, winged helix family  48.11 
 
 		 243 aa  90.1  9e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_3419  putative two component transcriptional regulator, winged helix family  51.04 
 
 		 240 aa  89.7  1e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_3090  putative two component transcriptional regulator, winged helix family  49.49 
 
 		 241 aa  89.7  1e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  hitchhiker  0.0000121276 
 
 
-
 
NC_013441  Gbro_3935  transcriptional regulator domain protein  45.61 
 
 		 270 aa  87.4  6e-17  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_010816  BLD_1194  putative response regulator  51.04 
 
 		 266 aa  87  7e-17  Bifidobacterium longum DJO10A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_0337  winged helix family two component response transcriptional regulator  47.87 
 
 		 239 aa  87  7e-17  Salinispora arenicola CNS-205  Bacteria  normal  1  normal  0.0279779 
 
 
-
 
NC_008699  Noca_4240  transcriptional regulator domain-containing protein  49.5 
 
 		 257 aa  87  7e-17  Nocardioides sp. JS614  Bacteria  normal  0.466466  n/a   
 
 
-
 
NC_013235  Namu_4983  putative two component transcriptional regulator, winged helix family  40.98 
 
 		 232 aa  86.7  1e-16  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_0443  response regulator receiver protein  44.44 
 
 		 250 aa  86.3  1e-16  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_0879  putative two component transcriptional regulator, winged helix family  51.06 
 
 		 259 aa  86.7  1e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.249855  hitchhiker  0.00478466 
 
 
-
 
NC_013521  Sked_04930  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.47 
 
 		 249 aa  85.5  2e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.793732  normal  1 
 
 
-
 
NC_013757  Gobs_4646  putative two component transcriptional regulator, winged helix family  44.55 
 
 		 249 aa  85.9  2e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_008541  Arth_3012  response regulator receiver protein  47.96 
 
 		 232 aa  85.5  2e-16  Arthrobacter sp. FB24  Bacteria  normal  0.721979  n/a   
 
 
-
 
NC_009380  Strop_0293  winged helix family two component response transcriptional regulator  48.39 
 
 		 239 aa  85.5  2e-16  Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_2724  putative two component transcriptional regulator, winged helix family  47 
 
 		 232 aa  85.1  3e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00387379 
 
 
-
 
NC_013174  Jden_0439  putative two component transcriptional regulator, winged helix family  47.47 
 
 		 248 aa  84.7  4e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  0.190602 
 
 
-
 
NC_014165  Tbis_0453  putative winged helix family two component transcriptional regulator  46.08 
 
 		 251 aa  84.7  4e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.190844  normal  0.275136 
 
 
-
 
NC_013595  Sros_0895  response regulator receiver protein  44.04 
 
 		 237 aa  84.3  4e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_2331  putative winged helix family two component transcriptional regulator  55.32 
 
 		 166 aa  84  7e-16  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.836335 
 
 
-
 
NC_009921  Franean1_6176  winged helix family two component response transcriptional regulator  45.1 
 
 		 247 aa  83.2  0.000000000000001  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.186762 
 
 
-
 
NC_014158  Tpau_3545  putative two component transcriptional regulator, winged helix family  46.67 
 
 		 243 aa  83.2  0.000000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.61486  n/a   
 
 
-
 
NC_014210  Ndas_4376  putative two component transcriptional regulator, winged helix family  45.36 
 
 		 255 aa  82.4  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_6823  putative two component transcriptional regulator, winged helix family  45.79 
 
 		 250 aa  82.4  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_0595  putative two component transcriptional regulator, winged helix family  46.39 
 
 		 237 aa  82.4  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET1126  transcriptional regulator  46.32 
 
 		 223 aa  81.6  0.000000000000003  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.0000289398  n/a   
 
 
-
 
NC_013721  HMPREF0424_0189  transcriptional regulatory protein, C-terminal domain protein  43.64 
 
 		 296 aa  81.6  0.000000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  1 
 
 
-
 
NC_013521  Sked_04480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  54.35 
 
 		 232 aa  81.6  0.000000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.226813 
 
 
-
 
NC_013552  DhcVS_944  transcriptional regulator  46.32 
 
 		 223 aa  80.9  0.000000000000005  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_1501  response regulator  49.47 
 
 		 206 aa  80.9  0.000000000000005  Thermobifida fusca YX  Bacteria  normal  0.117784  n/a   
 
 
-
 
NC_007333  Tfu_2737  transcriptional regulatory protein  45.26 
 
 		 253 aa  80.5  0.000000000000007  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_009338  Mflv_1650  response regulator receiver protein  47.06 
 
 		 278 aa  80.5  0.000000000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0110992  normal  1 
 
 
-
 
NC_009565  TBFG_10833  transcriptional regulatory protein  48.98 
 
 		 255 aa  79.7  0.00000000000001  Mycobacterium tuberculosis F11  Bacteria  normal  1  hitchhiker  0.00597919 
 
 
-
 
NC_008146  Mmcs_4525  response regulator receiver protein  47.06 
 
 		 257 aa  79.7  0.00000000000001  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008578  Acel_2025  response regulator receiver protein  44.68 
 
 		 261 aa  79.7  0.00000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008705  Mkms_4612  response regulator receiver protein  47.06 
 
 		 257 aa  79.7  0.00000000000001  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_4908  response regulator receiver protein  47.06 
 
 		 257 aa  79.7  0.00000000000001  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_2015  putative two component transcriptional regulator, winged helix family  50 
 
 		 224 aa  79.3  0.00000000000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.0839248  hitchhiker  0.0000000000000188648 
 
 
-
 
NC_013165  Shel_19870  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.32 
 
 		 224 aa  79  0.00000000000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.931606  normal  1 
 
 
-
 
NC_013131  Caci_8253  putative two component transcriptional regulator, winged helix family  46.81 
 
 		 264 aa  79  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013440  Hoch_0552  two component transcriptional regulator, winged helix family  46.88 
 
 		 226 aa  79  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.496663 
 
 
-
 
NC_013203  Apar_0432  putative two component transcriptional regulator, winged helix family  41.49 
 
 		 224 aa  79  0.00000000000002  Atopobium parvulum DSM 20469  Bacteria  hitchhiker  0.000490664  normal  1 
 
 
-
 
NC_013170  Ccur_08240  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  44.44 
 
 		 236 aa  78.2  0.00000000000003  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.956318  normal  0.778898 
 
 
-
 
NC_013169  Ksed_03550  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.81 
 
 		 261 aa  77.8  0.00000000000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.329191  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0955  two component transcriptional regulator  44.21 
 
 		 223 aa  77.8  0.00000000000005  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_5097  response regulator receiver protein  47.31 
 
 		 267 aa  77.4  0.00000000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_37670  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  43.24 
 
 		 256 aa  76.3  0.0000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.0528352 
 
 
-
 
NC_013124  Afer_0241  putative two component transcriptional regulator, winged helix family  43.3 
 
 		 217 aa  76.3  0.0000000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_0841  two component transcriptional regulator, winged helix family  46.94 
 
 		 223 aa  75.9  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009674  Bcer98_2250  two component transcriptional regulator  45.83 
 
 		 225 aa  74.7  0.0000000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  decreased coverage  0.00000295266  n/a   
 
 
-
 
NC_013946  Mrub_1539  two component transcriptional regulator, winged helix family  46.94 
 
 		 222 aa  74.7  0.0000000000004  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.0000287281  normal  0.103291 
 
 
-
 
NC_010184  BcerKBAB4_3288  two component transcriptional regulator  45.54 
 
 		 225 aa  74.3  0.0000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0366247  n/a   
 
 
-
 
NC_009718  Fnod_1433  two component transcriptional regulator  46.67 
 
 		 229 aa  73.9  0.0000000000006  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_3620  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  0.0597824  n/a   
 
 
-
 
NC_005945  BAS3396  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000765328  n/a   
 
 
-
 
NC_005957  BT9727_3358  transcriptional regulatory protein  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0000200566  n/a   
 
 
-
 
NC_006274  BCZK3308  transcriptional regulatory protein  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus cereus E33L  Bacteria  hitchhiker  0.000872353  n/a   
 
 
-
 
NC_011773  BCAH820_3612  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.20142e-22 
 
 
-
 
NC_007530  GBAA_3661  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000000222084  n/a   
 
 
-
 
NC_011772  BCG9842_B1606  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus cereus G9842  Bacteria  hitchhiker  0.00543423  hitchhiker  0.0000000112462 
 
 
-
 
NC_011658  BCAH187_A3627  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000000456124  n/a   
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  42.71 
 
 		 230 aa  72.8  0.000000000001  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A3709  DNA-binding response regulator  45.83 
 
 		 225 aa  73.2  0.000000000001  Bacillus cereus B4264  Bacteria  unclonable  0.0000227696  n/a   
 
 
-
 
NC_014210  Ndas_1389  putative two component transcriptional regulator, winged helix family  51.11 
 
 		 171 aa  72.8  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.287988  hitchhiker  0.00961108 
 
 
-
 
NC_002936  DET1162  transcriptional regulator, putative  40.78 
 
 		 238 aa  71.6  0.000000000003  Dehalococcoides ethenogenes 195  Bacteria  normal  0.829609  n/a   
 
 
-
 
NC_013172  Bfae_03260  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.21 
 
 		 251 aa  71.6  0.000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_0440  two component transcriptional regulator, winged helix family  41.67 
 
 		 230 aa  71.2  0.000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  41 
 
 		 253 aa  70.9  0.000000000006  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  41.67 
 
 		 230 aa  70.9  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  42.55 
 
 		 235 aa  70.1  0.000000000008  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  0.203788 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  41.58 
 
 		 233 aa  70.1  0.00000000001  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_014211  Ndas_5390  two component transcriptional regulator, winged helix family  42 
 
 		 243 aa  69.7  0.00000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013169  Ksed_08380  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  43.96 
 
 		 244 aa  68.9  0.00000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0276649  normal  0.165598 
 
 
-
 
NC_008146  Mmcs_0709  two component transcriptional regulator  43.27 
 
 		 237 aa  69.3  0.00000000002  Mycobacterium sp. MCS  Bacteria  normal  0.156486  n/a   
 
 
-
 
NC_008705  Mkms_0723  two component transcriptional regulator  43.27 
 
 		 237 aa  69.3  0.00000000002  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.0244444 
 
 
-
 
NC_009077  Mjls_0703  two component transcriptional regulator  43.27 
 
 		 237 aa  69.3  0.00000000002  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.273227 
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  47.42 
 
 		 231 aa  68.6  0.00000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.777838 
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  43.62 
 
 		 228 aa  67.8  0.00000000004  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0605198 
 
 
-
 
NC_008148  Rxyl_2781  two component transcriptional regulator  40.21 
 
 		 241 aa  68.2  0.00000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_2223  winged helix family two component transcriptional regulator  38.61 
 
 		 229 aa  67.8  0.00000000005  'Nostoc azollae' 0708  Bacteria  normal  0.335669  n/a   
 
 
-
 
NC_013517  Sterm_1892  two component transcriptional regulator, winged helix family  34.04 
 
 		 219 aa  67.8  0.00000000005  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00404304  n/a   
 
 
-
 
NC_013216  Dtox_2915  two component transcriptional regulator, winged helix family  41.94 
 
 		 225 aa  67.8  0.00000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.892207  normal  0.300351 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  36.7 
 
 		 236 aa  67.8  0.00000000005  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_008025  Dgeo_0087  two component transcriptional regulator  44.9 
 
 		 222 aa  67.4  0.00000000006  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_2939  response regulator receiver  46.74 
 
 		 232 aa  67.4  0.00000000006  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  38.95 
 
 		 223 aa  67  0.00000000007  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  38.95 
 
 		 223 aa  67  0.00000000007  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  43.16 
 
 		 229 aa  67  0.00000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_010725  Mpop_5257  two component transcriptional regulator, winged helix family  41.12 
 
 		 234 aa  67  0.00000000008  Methylobacterium populi BJ001  Bacteria  normal  0.025536  normal  1 
 
 
-
 
NC_010511  M446_6685  two component transcriptional regulator  42.06 
 
 		 234 aa  67  0.00000000009  Methylobacterium sp. 4-46  Bacteria  normal  0.599421  normal  1 
 
 
-
 
NC_007413  Ava_3453  two component transcriptional regulator  41 
 
 		 224 aa  67  0.00000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012803  Mlut_03350  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.62 
 
 		 262 aa  67  0.00000000009  Micrococcus luteus NCTC 2665  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_7423  two component transcriptional regulator PhoB, winged helix family  42.06 
 
 		 234 aa  66.6  0.00000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_3363  two component transcriptional regulator, winged helix family  46.53 
 
 		 233 aa  66.2  0.0000000001  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00866984  n/a   
 
 
-
 
NC_007348  Reut_B4049  response regulator receiver:transcriptional regulatory protein, C-terminal  43.75 
 
 		 231 aa  66.6  0.0000000001  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  47.92 
 
 		 230 aa  66.2  0.0000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_009632  SaurJH1_1580  response regulator receiver  39.62 
 
 		 241 aa  66.6  0.0000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_0993  two component transcriptional regulator, winged helix family  47.19 
 
 		 237 aa  66.2  0.0000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
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