More than 300 homologs were found in PanDaTox collection
for query gene Francci3_4209 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007777  Francci3_4209  two component LuxR family transcriptional regulator  100 
 
 		 201 aa  401  1e-111  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_4598  response regulator receiver protein  37.76 
 
 		 201 aa  114  1.0000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.053163 
 
 
-
 
NC_013131  Caci_3654  two component transcriptional regulator, LuxR family  35.71 
 
 		 201 aa  109  3e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0345388 
 
 
-
 
NC_013159  Svir_02200  two component transcriptional regulator, LuxR family  34.17 
 
 		 208 aa  102  4e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_7316  response regulator receiver protein  35.71 
 
 		 201 aa  96.7  2e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_0091  response regulator receiver protein  35.03 
 
 		 204 aa  95.5  5e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.520551  normal  1 
 
 
-
 
NC_013510  Tcur_2770  two component transcriptional regulator, LuxR family  34.36 
 
 		 201 aa  95.1  6e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  0.282039  n/a   
 
 
-
 
NC_009674  Bcer98_3871  two component LuxR family transcriptional regulator  29.65 
 
 		 200 aa  93.2  2e-18  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00685623  n/a   
 
 
-
 
NC_012669  Bcav_0286  two component transcriptional regulator, LuxR family  32.99 
 
 		 203 aa  92.8  3e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.784033  normal  0.130384 
 
 
-
 
NC_014210  Ndas_1079  two component transcriptional regulator, LuxR family  35.57 
 
 		 200 aa  93.2  3e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.782019  normal  0.0499592 
 
 
-
 
NC_007912  Sde_3820  two component LuxR family transcriptional regulator  33.33 
 
 		 205 aa  91.7  7e-18  Saccharophagus degradans 2-40  Bacteria  normal  0.113202  normal  1 
 
 
-
 
NC_008345  Sfri_0357  two component transcriptional regulator, LuxR family protein  41.67 
 
 		 202 aa  90.5  1e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_8146  response regulator receiver protein  35.53 
 
 		 202 aa  90.9  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.524184 
 
 
-
 
NC_010184  BcerKBAB4_5150  two component LuxR family transcriptional regulator  29.08 
 
 		 200 aa  89.4  3e-17  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_1624  two component transcriptional regulator, LuxR family  34.33 
 
 		 201 aa  89.7  3e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0305603  n/a   
 
 
-
 
NC_011138  MADE_03365  DNA-binding response regulator, LuxR family protein  36 
 
 		 205 aa  89.7  3e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0655  two component transcriptional regulator, LuxR family  29.23 
 
 		 200 aa  89.4  3e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_0258  two component transcriptional regulator, LuxR family  30.1 
 
 		 200 aa  89  4e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011658  BCAH187_A5531  DNA-binding response regulator  28.64 
 
 		 200 aa  88.6  5e-17  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A5475  DNA-binding response regulator  28.64 
 
 		 200 aa  89  5e-17  Bacillus cereus B4264  Bacteria  normal  0.132453  n/a   
 
 
-
 
NC_013174  Jden_0118  two component transcriptional regulator, LuxR family  29.15 
 
 		 205 aa  88.6  6e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  0.137239  normal  0.184056 
 
 
-
 
NC_011772  BCG9842_B5477  DNA-binding response regulator  28.14 
 
 		 200 aa  88.6  6e-17  Bacillus cereus G9842  Bacteria  hitchhiker  0.00156963  hitchhiker  0.00000000000102018 
 
 
-
 
NC_013595  Sros_6441  response regulator receiver protein  32.65 
 
 		 227 aa  88.6  6e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.176234  normal  0.0893652 
 
 
-
 
NC_005945  BAS5200  DNA-binding response regulator  28.64 
 
 		 200 aa  88.2  7e-17  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_5597  DNA-binding response regulator  28.64 
 
 		 200 aa  88.2  7e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_5482  DNA-binding response regulator  28.64 
 
 		 200 aa  88.2  8e-17  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_5034  DNA-binding response regulator  28.64 
 
 		 200 aa  87.4  1e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.617082  n/a   
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  33.16 
 
 		 200 aa  87.4  1e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_011773  BCAH820_5444  DNA-binding response regulator  28.64 
 
 		 200 aa  87.4  1e-16  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_014165  Tbis_0907  LuxR family two component transcriptional regulator  34.01 
 
 		 197 aa  87.4  1e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.365102  normal  1 
 
 
-
 
NC_006274  BCZK5050  DNA-binding response regulator  28.14 
 
 		 200 aa  86.7  2e-16  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_3506  two component LuxR family transcriptional regulator  30.61 
 
 		 198 aa  87  2e-16  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_0288  LuxR response regulator receiver  32.65 
 
 		 201 aa  86.3  3e-16  Thermobifida fusca YX  Bacteria  normal  0.0935286  n/a   
 
 
-
 
NC_013595  Sros_1680  response regulator receiver protein  33.84 
 
 		 197 aa  86.3  3e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.516841 
 
 
-
 
NC_002976  SERP0889  LuxR family DNA-binding response regulator  28.14 
 
 		 200 aa  85.9  4e-16  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.0000916195  n/a   
 
 
-
 
NC_009997  Sbal195_0352  two component LuxR family transcriptional regulator  34.64 
 
 		 198 aa  85.5  4e-16  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_0347  two component LuxR family transcriptional regulator  30.61 
 
 		 198 aa  85.9  4e-16  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_11510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.98 
 
 		 203 aa  85.9  4e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.575058  normal  1 
 
 
-
 
NC_009665  Shew185_0345  two component LuxR family transcriptional regulator  30.61 
 
 		 198 aa  85.9  4e-16  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_0691  two component transcriptional regulator, LuxR family  34.43 
 
 		 190 aa  85.1  6e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_0355  two component transcriptional regulator, LuxR family  34.64 
 
 		 198 aa  85.1  6e-16  Shewanella baltica OS223  Bacteria  normal  0.881439  hitchhiker  0.0000000668977 
 
 
-
 
NC_013947  Snas_2068  two component transcriptional regulator, LuxR family  30.46 
 
 		 212 aa  85.1  7e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.385073  normal  0.894995 
 
 
-
 
NC_014211  Ndas_5200  two component transcriptional regulator, LuxR family  33.16 
 
 		 223 aa  85.1  7e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0156716  normal  0.415255 
 
 
-
 
NC_008578  Acel_0195  two component LuxR family transcriptional regulator  31.98 
 
 		 205 aa  84.7  8e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.116105 
 
 
-
 
NC_013739  Cwoe_4753  two component transcriptional regulator, LuxR family  31.98 
 
 		 201 aa  84.3  0.000000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.226774 
 
 
-
 
NC_013235  Namu_3006  two component transcriptional regulator, LuxR family  31.34 
 
 		 204 aa  84.3  0.000000000000001  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000248543  hitchhiker  0.000146029 
 
 
-
 
NC_007954  Sden_3475  response regulator receiver  40.8 
 
 		 207 aa  84  0.000000000000001  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_009487  SaurJH9_1383  two component LuxR family transcriptional regulator  28.93 
 
 		 200 aa  84.3  0.000000000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000320378  n/a   
 
 
-
 
NC_009632  SaurJH1_1410  response regulator receiver  28.93 
 
 		 200 aa  84.3  0.000000000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.000440417  n/a   
 
 
-
 
NC_004347  SO_0351  LuxR family DNA-binding response regulator  33.99 
 
 		 198 aa  83.6  0.000000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_0322  two component LuxR family transcriptional regulator  40 
 
 		 198 aa  83.6  0.000000000000002  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  28.37 
 
 		 219 aa  83.2  0.000000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_013595  Sros_4334  response regulator receiver protein  35.82 
 
 		 200 aa  82.8  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.574495  normal  0.636855 
 
 
-
 
NC_008321  Shewmr4_3621  two component LuxR family transcriptional regulator  40 
 
 		 198 aa  82.8  0.000000000000003  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3818  two component LuxR family transcriptional regulator  40 
 
 		 198 aa  82.8  0.000000000000003  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_1720  LuxR family two component transcriptional regulator  34.68 
 
 		 201 aa  83.2  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_5262  two component transcriptional regulator, LuxR family  29.9 
 
 		 219 aa  82.8  0.000000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  30.59 
 
 		 220 aa  82.4  0.000000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4055  response regulator receiver protein  32.99 
 
 		 201 aa  82.4  0.000000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0367887 
 
 
-
 
NC_013093  Amir_1937  two component transcriptional regulator, LuxR family  32.16 
 
 		 201 aa  82  0.000000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_008347  Mmar10_2543  two component LuxR family transcriptional regulator  32.65 
 
 		 202 aa  82  0.000000000000006  Maricaulis maris MCS10  Bacteria  normal  0.446643  normal  1 
 
 
-
 
NC_013757  Gobs_1641  two component transcriptional regulator, LuxR family  30.46 
 
 		 201 aa  81.6  0.000000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_011365  Gdia_1908  two component transcriptional regulator, LuxR family  32.99 
 
 		 201 aa  81.3  0.000000000000008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.264232 
 
 
-
 
NC_013946  Mrub_1264  two component LuxR family transcriptional regulator  31.12 
 
 		 200 aa  81.3  0.000000000000009  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.86401 
 
 
-
 
NC_013739  Cwoe_5628  two component transcriptional regulator, LuxR family  34.16 
 
 		 200 aa  80.9  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.946433  normal  0.876589 
 
 
-
 
NC_012803  Mlut_16250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.53 
 
 		 224 aa  80.9  0.00000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.216822  n/a   
 
 
-
 
NC_013172  Bfae_06340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.3 
 
 		 211 aa  80.5  0.00000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  28.36 
 
 		 217 aa  79.7  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_1588  two component transcriptional regulator, LuxR family  31.82 
 
 		 201 aa  80.1  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.117504  normal  1 
 
 
-
 
NC_010506  Swoo_4591  two component LuxR family transcriptional regulator  29.08 
 
 		 198 aa  80.5  0.00000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  unclonable  0.00000001788 
 
 
-
 
NC_012669  Bcav_0588  two component transcriptional regulator, LuxR family  32.84 
 
 		 204 aa  79.3  0.00000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal  1 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  26.82 
 
 		 226 aa  79.3  0.00000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_2957  two component transcriptional regulator, LuxR family  30.1 
 
 		 201 aa  79.3  0.00000000000004  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00144362  n/a   
 
 
-
 
NC_013947  Snas_0503  two component transcriptional regulator, LuxR family  32.81 
 
 		 202 aa  79  0.00000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.900292 
 
 
-
 
NC_013510  Tcur_3614  two component transcriptional regulator, LuxR family  33.51 
 
 		 201 aa  79  0.00000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.765091  n/a   
 
 
-
 
NC_013521  Sked_06600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34 
 
 		 200 aa  78.6  0.00000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.680692  normal  1 
 
 
-
 
NC_013131  Caci_1897  two component transcriptional regulator, LuxR family  31.66 
 
 		 200 aa  79  0.00000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.299419  normal  1 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  26.96 
 
 		 216 aa  78.6  0.00000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_0782  two component transcriptional regulator, LuxR family  27.57 
 
 		 220 aa  77.8  0.00000000000009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_0763  two component transcriptional regulator, LuxR family  27.92 
 
 		 208 aa  77.8  0.00000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.313515 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  29.58 
 
 		 214 aa  77.8  0.0000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_1808  two component transcriptional regulator, LuxR family  33.66 
 
 		 201 aa  77.4  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.207018 
 
 
-
 
NC_014158  Tpau_0354  two component transcriptional regulator, LuxR family  31.94 
 
 		 222 aa  76.6  0.0000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_4064  two component LuxR family transcriptional regulator  27.88 
 
 		 213 aa  77  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.368666  normal  0.0789055 
 
 
-
 
NC_008532  STER_1290  DNA-binding response regulator  35.83 
 
 		 200 aa  77  0.0000000000002  Streptococcus thermophilus LMD-9  Bacteria  normal  0.29796  n/a   
 
 
-
 
NC_013947  Snas_4572  two component transcriptional regulator, LuxR family  30.81 
 
 		 200 aa  76.3  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal  0.115695 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  27.27 
 
 		 218 aa  76.3  0.0000000000003  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  27.4 
 
 		 216 aa  75.9  0.0000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  32.35 
 
 		 216 aa  75.9  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  29.91 
 
 		 215 aa  75.9  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal  1 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  29.3 
 
 		 213 aa  75.5  0.0000000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  28.77 
 
 		 213 aa  75.5  0.0000000000005  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_2610  two component transcriptional regulator, LuxR family  39.13 
 
 		 144 aa  75.5  0.0000000000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000438854  normal  0.0112001 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  27.62 
 
 		 222 aa  75.5  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.764026 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  29.19 
 
 		 217 aa  75.5  0.0000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  24.52 
 
 		 242 aa  75.5  0.0000000000006  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  26.13 
 
 		 236 aa  75.1  0.0000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  29.19 
 
 		 213 aa  75.1  0.0000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  29.81 
 
 		 219 aa  75.1  0.0000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.218307 
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  29.05 
 
 		 218 aa  74.7  0.0000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
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