More than 300 homologs were found in PanDaTox collection
for query gene Bcav_2978 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_2978  binding-protein-dependent transport systems inner membrane component  100 
 
 
289 aa  568  1e-161  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  37.41 
 
 
295 aa  201  9.999999999999999e-51  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  38.3 
 
 
288 aa  199  5e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  41.22 
 
 
322 aa  196  3e-49  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  39.79 
 
 
317 aa  193  2e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
308 aa  191  8e-48  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  39.06 
 
 
310 aa  191  9e-48  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  38.41 
 
 
320 aa  191  1e-47  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_012669  Bcav_1523  binding-protein-dependent transport systems inner membrane component  38.95 
 
 
321 aa  191  1e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  41.13 
 
 
316 aa  184  1.0000000000000001e-45  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  38.99 
 
 
324 aa  183  3e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
299 aa  182  5.0000000000000004e-45  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  38.51 
 
 
317 aa  180  2.9999999999999997e-44  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  42.14 
 
 
316 aa  179  7e-44  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  38.85 
 
 
287 aa  178  8e-44  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  37.82 
 
 
303 aa  178  9e-44  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
315 aa  177  2e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  34.04 
 
 
289 aa  177  2e-43  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_012669  Bcav_0801  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
319 aa  173  1.9999999999999998e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.836257  decreased coverage  0.00115511 
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  37.77 
 
 
312 aa  174  1.9999999999999998e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  35.74 
 
 
301 aa  172  6.999999999999999e-42  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
309 aa  172  6.999999999999999e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
314 aa  172  7.999999999999999e-42  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
319 aa  171  1e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2034  binding-protein-dependent transport systems inner membrane component  38.83 
 
 
323 aa  171  1e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.059557  normal  0.598754 
 
 
-
 
NC_008261  CPF_1114  sugar ABC transporter, permease protein  34.89 
 
 
301 aa  171  1e-41  Clostridium perfringens ATCC 13124  Bacteria  normal  0.212611  n/a   
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  35.08 
 
 
294 aa  170  2e-41  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  33.93 
 
 
310 aa  171  2e-41  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
310 aa  171  2e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  35.31 
 
 
319 aa  170  2e-41  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  37.09 
 
 
320 aa  171  2e-41  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  35.4 
 
 
321 aa  170  3e-41  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
305 aa  170  3e-41  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
310 aa  170  3e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
314 aa  169  4e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
306 aa  169  4e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  37.68 
 
 
305 aa  169  5e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
291 aa  169  5e-41  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  36.27 
 
 
316 aa  169  5e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
299 aa  169  6e-41  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
306 aa  168  8e-41  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  32.78 
 
 
310 aa  168  9e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  37.73 
 
 
298 aa  168  9e-41  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  37.01 
 
 
307 aa  168  1e-40  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  37.01 
 
 
307 aa  168  1e-40  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
322 aa  167  1e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
300 aa  168  1e-40  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0620  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
305 aa  167  1e-40  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000205165  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
299 aa  167  1e-40  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
309 aa  167  2e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
318 aa  167  2e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
320 aa  167  2e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
315 aa  167  2e-40  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
307 aa  166  2.9999999999999998e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  35.97 
 
 
305 aa  166  4e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  34.63 
 
 
293 aa  166  5e-40  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  36 
 
 
318 aa  166  5e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  36.81 
 
 
313 aa  166  5e-40  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_010001  Cphy_1530  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
295 aa  166  5e-40  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
294 aa  166  5.9999999999999996e-40  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  38.11 
 
 
318 aa  166  5.9999999999999996e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0796  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
312 aa  165  8e-40  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.633875  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
292 aa  165  9e-40  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_008048  Sala_0750  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
290 aa  164  1.0000000000000001e-39  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  35.05 
 
 
294 aa  165  1.0000000000000001e-39  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5440  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
329 aa  164  1.0000000000000001e-39  Conexibacter woesei DSM 14684  Bacteria  normal  0.811614  normal 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  36.79 
 
 
300 aa  164  2.0000000000000002e-39  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  36.27 
 
 
316 aa  164  2.0000000000000002e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  37.8 
 
 
316 aa  163  2.0000000000000002e-39  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_011981  Avi_7592  ABC transporter  36.64 
 
 
306 aa  164  2.0000000000000002e-39  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  36.67 
 
 
296 aa  163  3e-39  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  34.27 
 
 
300 aa  163  4.0000000000000004e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_07470  carbohydrate ABC transporter membrane protein  37.85 
 
 
304 aa  163  4.0000000000000004e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  36.67 
 
 
296 aa  163  4.0000000000000004e-39  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_011831  Cagg_2266  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
296 aa  162  5.0000000000000005e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000392628 
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
317 aa  162  6e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  37.5 
 
 
301 aa  162  7e-39  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_3676  binding-protein-dependent transport systems inner membrane component  38.36 
 
 
309 aa  162  8.000000000000001e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
316 aa  162  8.000000000000001e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  34.04 
 
 
317 aa  161  1e-38  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  37.77 
 
 
307 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
298 aa  161  1e-38  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
353 aa  161  1e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  35.31 
 
 
314 aa  160  2e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
294 aa  160  3e-38  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1361  binding-protein-dependent transport systems inner membrane component  35.49 
 
 
315 aa  160  3e-38  Acidothermus cellulolyticus 11B  Bacteria  normal  0.193472  normal  0.165724 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  36.43 
 
 
305 aa  160  3e-38  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2501  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
312 aa  160  3e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1533  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
318 aa  159  4e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.384041  normal  0.0165665 
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  38.68 
 
 
307 aa  159  5e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
293 aa  159  5e-38  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  37.98 
 
 
317 aa  159  5e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  35.61 
 
 
297 aa  159  5e-38  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1704  putative transport system permease ABC transporter protein  37.02 
 
 
324 aa  159  6e-38  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
293 aa  159  6e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  35.9 
 
 
279 aa  159  6e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
318 aa  159  7e-38  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  34.66 
 
 
283 aa  159  7e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0920  binding-protein-dependent transport systems inner membrane component  38.85 
 
 
319 aa  158  8e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0185  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
315 aa  158  9e-38  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
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