More than 300 homologs were found in PanDaTox collection
for query gene Avi_5887 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_5887  transcriptional regulator AsnC family  100 
 
 
158 aa  325  2.0000000000000001e-88  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5002  transcriptional regulator, AsnC family  91.72 
 
 
158 aa  310  6.999999999999999e-84  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.947016  normal  0.33214 
 
 
-
 
NC_009621  Smed_5590  AsnC family transcriptional regulator  91.77 
 
 
158 aa  307  2.9999999999999997e-83  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.321547 
 
 
-
 
NC_011368  Rleg2_4412  transcriptional regulator, AsnC family  91.14 
 
 
158 aa  307  4e-83  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1926  AsnC family transcriptional regulator  91.67 
 
 
194 aa  301  3.0000000000000004e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.883962  normal 
 
 
-
 
NC_011894  Mnod_2918  transcriptional regulator, AsnC family  86.08 
 
 
158 aa  291  2e-78  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4957  AsnC family transcriptional regulator  77.22 
 
 
158 aa  266  5.9999999999999995e-71  Paracoccus denitrificans PD1222  Bacteria  normal  0.272407  normal  0.193763 
 
 
-
 
NC_008752  Aave_2180  AsnC family transcriptional regulator  60.51 
 
 
164 aa  218  1.9999999999999999e-56  Acidovorax citrulli AAC00-1  Bacteria  normal  0.642744  normal  0.728347 
 
 
-
 
NC_012792  Vapar_5628  transcriptional regulator, AsnC family  58.6 
 
 
164 aa  215  2e-55  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2933  AsnC family transcriptional regulator  61.94 
 
 
165 aa  214  2.9999999999999998e-55  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.256284  n/a   
 
 
-
 
NC_010676  Bphyt_6096  transcriptional regulator, AsnC family  63.23 
 
 
165 aa  214  5e-55  Burkholderia phytofirmans PsJN  Bacteria  normal  0.69834  normal 
 
 
-
 
NC_007952  Bxe_B1488  AsnC family transcriptional regulator  63.23 
 
 
165 aa  213  7e-55  Burkholderia xenovorans LB400  Bacteria  normal  0.201317  hitchhiker  0.00251248 
 
 
-
 
NC_010557  BamMC406_6050  AsnC family transcriptional regulator  61.29 
 
 
163 aa  212  1.9999999999999998e-54  Burkholderia ambifaria MC40-6  Bacteria  normal  0.426837  normal  0.974446 
 
 
-
 
NC_010512  Bcenmc03_6283  AsnC family transcriptional regulator  61.29 
 
 
163 aa  212  1.9999999999999998e-54  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.9563  normal 
 
 
-
 
NC_008392  Bamb_6347  AsnC family transcriptional regulator  61.29 
 
 
163 aa  212  1.9999999999999998e-54  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6569  AsnC family transcriptional regulator  61.94 
 
 
165 aa  211  1.9999999999999998e-54  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6686  AsnC family transcriptional regulator  61.29 
 
 
169 aa  211  1.9999999999999998e-54  Burkholderia cenocepacia HI2424  Bacteria  normal  0.839318  normal 
 
 
-
 
NC_008062  Bcen_6451  AsnC family transcriptional regulator  61.29 
 
 
163 aa  212  1.9999999999999998e-54  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0051  AsnC family transcriptional regulator  60.65 
 
 
164 aa  211  2.9999999999999995e-54  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0783  AsnC family transcriptional regulator  61.29 
 
 
167 aa  209  1e-53  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1584  transcriptional regulator, AsnC family  57.79 
 
 
164 aa  197  6e-50  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0261  transcriptional regulator, AsnC family  55.77 
 
 
162 aa  196  7.999999999999999e-50  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0144  regulatory proteins, AsnC/Lrp  55.77 
 
 
162 aa  196  7.999999999999999e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3066  AsnC family transcriptional regulator  56.77 
 
 
164 aa  187  5.999999999999999e-47  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.00609766  hitchhiker  0.00646001 
 
 
-
 
NC_010676  Bphyt_5902  transcriptional regulator, AsnC family  53.25 
 
 
163 aa  185  3e-46  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5501  transcriptional regulator, AsnC family  43.23 
 
 
165 aa  150  8.999999999999999e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00105983 
 
 
-
 
NC_011368  Rleg2_5512  transcriptional regulator, AsnC family  43.23 
 
 
165 aa  149  1e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  decreased coverage  0.00034471 
 
 
-
 
NC_012848  Rleg_5233  transcriptional regulator, AsnC family  42.58 
 
 
165 aa  148  3e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.935645  normal  0.378973 
 
 
-
 
NC_009429  Rsph17025_3168  hypothetical protein  46.71 
 
 
158 aa  145  2.0000000000000003e-34  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.254618  normal  0.523105 
 
 
-
 
NC_009668  Oant_3470  AsnC family transcriptional regulator  43.66 
 
 
165 aa  137  3.9999999999999997e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2693  AsnC family transcriptional regulator  42.38 
 
 
159 aa  137  6e-32  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000635  transcriptional regulator AsnC family  44.06 
 
 
159 aa  132  1.9999999999999998e-30  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2730  AsnC family transcriptional regulator  43.23 
 
 
158 aa  130  7.999999999999999e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.256051  n/a   
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  47.18 
 
 
164 aa  130  1.0000000000000001e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  46.81 
 
 
164 aa  129  2.0000000000000002e-29  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  52.5 
 
 
164 aa  128  3e-29  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  52.5 
 
 
167 aa  125  2.0000000000000002e-28  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  51.67 
 
 
167 aa  125  2.0000000000000002e-28  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_009620  Smed_3702  AsnC family transcriptional regulator  44.8 
 
 
217 aa  125  2.0000000000000002e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  51.67 
 
 
165 aa  125  2.0000000000000002e-28  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  51.67 
 
 
167 aa  125  3e-28  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  51.67 
 
 
167 aa  125  3e-28  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  125  3e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  125  3e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  125  3e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  125  3e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  125  3e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  51.67 
 
 
167 aa  124  5e-28  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  124  5e-28  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  124  5e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  44.68 
 
 
164 aa  124  5e-28  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  51.67 
 
 
168 aa  124  6e-28  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_008752  Aave_2309  AsnC family transcriptional regulator  45.1 
 
 
157 aa  124  6e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  hitchhiker  0.00293447 
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  43.97 
 
 
164 aa  123  1e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  43.97 
 
 
164 aa  123  1e-27  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_010552  BamMC406_3278  AsnC family transcriptional regulator  42.41 
 
 
152 aa  123  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.882377 
 
 
-
 
NC_010086  Bmul_5229  AsnC family transcriptional regulator  42.41 
 
 
152 aa  123  1e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.104749  normal 
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  43.97 
 
 
164 aa  123  1e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  50.83 
 
 
163 aa  122  1e-27  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_008709  Ping_3606  transcriptional regulator of AsnC/Lrp family protein  44.3 
 
 
155 aa  123  1e-27  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_008228  Patl_1480  AsnC family transcriptional regulator  41.56 
 
 
153 aa  123  1e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  43.97 
 
 
164 aa  123  1e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_008391  Bamb_5136  AsnC family transcriptional regulator  42.41 
 
 
177 aa  122  1e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.944237 
 
 
-
 
NC_010515  Bcenmc03_4159  AsnC family transcriptional regulator  42.41 
 
 
152 aa  122  2e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.409138  normal 
 
 
-
 
NC_007511  Bcep18194_B2899  AsnC family transcriptional regulator  42.41 
 
 
154 aa  122  2e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0319  transcription regulator AsnC  43.14 
 
 
152 aa  122  2e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02115  leucine-responsive transcriptional regulator  47.69 
 
 
144 aa  122  2e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.0000100067  n/a   
 
 
-
 
NC_008044  TM1040_1174  AsnC family transcriptional regulator  36.24 
 
 
177 aa  122  2e-27  Ruegeria sp. TM1040  Bacteria  normal  0.313461  normal  0.325282 
 
 
-
 
NC_008061  Bcen_4810  AsnC family transcriptional regulator  42.41 
 
 
152 aa  122  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.402994  n/a   
 
 
-
 
NC_010002  Daci_2497  AsnC family transcriptional regulator  44.52 
 
 
156 aa  122  2e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.38008  normal  0.590435 
 
 
-
 
NC_008543  Bcen2424_3357  AsnC family transcriptional regulator  42.41 
 
 
152 aa  122  2e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.773724  normal 
 
 
-
 
NC_003910  CPS_4408  proline-responsive regulatory protein  48.06 
 
 
158 aa  121  3e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.982858  n/a   
 
 
-
 
NC_009076  BURPS1106A_0374  leucine-responsive regulatory protein  43.14 
 
 
152 aa  121  4e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0361  leucine-responsive regulatory protein  43.14 
 
 
152 aa  121  4e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0551  transcription regulator AsnC  43.14 
 
 
152 aa  121  4e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  50 
 
 
166 aa  121  4e-27  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  42.96 
 
 
164 aa  120  6e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  42.96 
 
 
164 aa  120  6e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  42.96 
 
 
164 aa  120  6e-27  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_008781  Pnap_3221  AsnC family transcriptional regulator  43.14 
 
 
155 aa  120  7e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2760  leucine-responsive transcriptional regulator  50 
 
 
158 aa  120  8e-27  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2815  AsnC family transcriptional regulator  38.3 
 
 
166 aa  120  9e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.938764  normal 
 
 
-
 
NC_008228  Patl_2461  leucine-responsive transcriptional regulator  43.57 
 
 
161 aa  119  9.999999999999999e-27  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.000000018296  n/a   
 
 
-
 
NC_008786  Veis_2147  AsnC family transcriptional regulator  43.71 
 
 
158 aa  119  9.999999999999999e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.940571  normal 
 
 
-
 
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