More than 300 homologs were found in PanDaTox collection
for query gene Amir_2855 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_2855  short-chain dehydrogenase/reductase SDR  100 
 
 
230 aa  444  1.0000000000000001e-124  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0271383  n/a   
 
 
-
 
NC_013440  Hoch_0320  short-chain dehydrogenase/reductase SDR  52.27 
 
 
240 aa  186  3e-46  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  33.49 
 
 
252 aa  108  6e-23  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  33.62 
 
 
249 aa  85.9  5e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  31.93 
 
 
270 aa  82.8  0.000000000000004  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4129  short chain dehydrogenase  31.51 
 
 
270 aa  82.8  0.000000000000004  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2296  short-chain dehydrogenase/reductase SDR  27.83 
 
 
238 aa  82.4  0.000000000000006  Geobacter sp. M21  Bacteria  n/a    normal  0.0366896 
 
 
-
 
NC_008639  Cpha266_0157  short-chain dehydrogenase/reductase SDR  30.26 
 
 
249 aa  81.6  0.000000000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0558  short chain dehydrogenase  31.46 
 
 
272 aa  79  0.00000000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.449424 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  29.91 
 
 
258 aa  77.8  0.0000000000001  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  36.46 
 
 
245 aa  77.4  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_010338  Caul_2944  short-chain dehydrogenase/reductase SDR  35.96 
 
 
291 aa  77  0.0000000000002  Caulobacter sp. K31  Bacteria  normal  0.0718028  normal 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  36.76 
 
 
245 aa  76.6  0.0000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  36.76 
 
 
245 aa  76.6  0.0000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  31.78 
 
 
260 aa  76.3  0.0000000000004  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_011757  Mchl_4114  short-chain dehydrogenase/reductase SDR  28.51 
 
 
273 aa  75.9  0.0000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.953941  normal 
 
 
-
 
NC_007404  Tbd_2785  short chain dehydrogenase  33.19 
 
 
254 aa  75.9  0.0000000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.73728  normal  0.939169 
 
 
-
 
NC_008554  Sfum_3431  short-chain dehydrogenase/reductase SDR  32.17 
 
 
238 aa  75.9  0.0000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  hitchhiker  0.000136725 
 
 
-
 
NC_011059  Paes_0216  short-chain dehydrogenase/reductase SDR  32.46 
 
 
223 aa  75.1  0.0000000000008  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.209414  normal 
 
 
-
 
NC_013922  Nmag_0449  short-chain dehydrogenase/reductase SDR  31.15 
 
 
257 aa  74.7  0.000000000001  Natrialba magadii ATCC 43099  Archaea  normal  0.237578  n/a   
 
 
-
 
NC_011663  Sbal223_2175  short chain dehydrogenase  31.05 
 
 
272 aa  74.7  0.000000000001  Shewanella baltica OS223  Bacteria  normal  0.328635  hitchhiker  0.00607004 
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  33.19 
 
 
260 aa  73.9  0.000000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3791  short-chain dehydrogenase/reductase SDR  28.46 
 
 
273 aa  73.2  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.0700292  normal 
 
 
-
 
NC_004578  PSPTO_1861  oxidoreductase, short chain dehydrogenase/reductase family  31.87 
 
 
270 aa  73.2  0.000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0952097  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  34.04 
 
 
260 aa  73.2  0.000000000003  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_007947  Mfla_1505  3-oxoacyl-[acyl-carrier-protein] reductase  32.26 
 
 
244 aa  72.8  0.000000000004  Methylobacillus flagellatus KT  Bacteria  normal  0.0160485  normal 
 
 
-
 
NC_012912  Dd1591_2060  short chain dehydrogenase  31.15 
 
 
270 aa  72  0.000000000007  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2534  short-chain dehydrogenase/reductase SDR  31.22 
 
 
247 aa  72  0.000000000008  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010831  Cphamn1_0247  short-chain dehydrogenase/reductase SDR  30.86 
 
 
223 aa  71.6  0.000000000008  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  24.46 
 
 
242 aa  71.6  0.000000000009  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  34.36 
 
 
259 aa  71.6  0.000000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3690  short-chain dehydrogenase/reductase SDR  30.39 
 
 
233 aa  71.2  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  0.929403  normal 
 
 
-
 
NC_008146  Mmcs_3677  short-chain dehydrogenase/reductase SDR  30.39 
 
 
233 aa  71.2  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6615  short chain dehydrogenase  31.32 
 
 
271 aa  71.2  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.522985  normal  0.0823373 
 
 
-
 
NC_009436  Ent638_2279  short chain dehydrogenase  31.52 
 
 
272 aa  71.6  0.00000000001  Enterobacter sp. 638  Bacteria  normal  normal  0.15727 
 
 
-
 
NC_007948  Bpro_4895  short chain dehydrogenase  28.45 
 
 
258 aa  70.5  0.00000000002  Polaromonas sp. JS666  Bacteria  hitchhiker  0.000739396  normal 
 
 
-
 
NC_008705  Mkms_3750  short-chain dehydrogenase/reductase SDR  30.39 
 
 
233 aa  70.9  0.00000000002  Mycobacterium sp. KMS  Bacteria  normal  0.8736  normal  0.785854 
 
 
-
 
NC_009338  Mflv_2501  short-chain dehydrogenase/reductase SDR  29.67 
 
 
233 aa  69.7  0.00000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  29.23 
 
 
262 aa  69.7  0.00000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5052  short-chain dehydrogenase/reductase SDR  31.34 
 
 
246 aa  70.1  0.00000000003  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6445  short-chain dehydrogenase/reductase SDR  32.24 
 
 
275 aa  69.3  0.00000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6205  short chain dehydrogenase  29.89 
 
 
274 aa  69.7  0.00000000004  Variovorax paradoxus S110  Bacteria  normal  0.218013  n/a   
 
 
-
 
NC_011891  A2cp1_1999  short-chain dehydrogenase/reductase SDR  32.23 
 
 
225 aa  69.7  0.00000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.570082  n/a   
 
 
-
 
NC_011145  AnaeK_1914  short-chain dehydrogenase/reductase SDR  32.23 
 
 
225 aa  69.3  0.00000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0684  short-chain dehydrogenase/reductase SDR  34.43 
 
 
227 aa  69.7  0.00000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06461  3-oxoacyl-(acyl carrier protein) reductase  32.09 
 
 
239 aa  69.3  0.00000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010681  Bphyt_2049  short chain dehydrogenase  29.82 
 
 
286 aa  69.3  0.00000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.0000200632 
 
 
-
 
NC_009943  Dole_1608  short-chain dehydrogenase/reductase SDR  36.92 
 
 
275 aa  68.9  0.00000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0122  short-chain dehydrogenase/reductase SDR  33.52 
 
 
224 aa  68.9  0.00000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_5291  short chain dehydrogenase  27.59 
 
 
260 aa  68.6  0.00000000007  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0152  short-chain dehydrogenase/reductase SDR  32 
 
 
223 aa  68.6  0.00000000007  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  32.59 
 
 
271 aa  68.9  0.00000000007  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  33.63 
 
 
258 aa  68.6  0.00000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2374  short-chain dehydrogenase/reductase SDR  30.98 
 
 
256 aa  68.6  0.00000000008  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000603  putative 3-oxoacyl-(acyl carrier protein) reductase  32.09 
 
 
239 aa  68.2  0.00000000009  Vibrio sp. Ex25  Bacteria  hitchhiker  0.0031423  n/a   
 
 
-
 
NC_009972  Haur_0715  short-chain dehydrogenase/reductase SDR  28.34 
 
 
269 aa  68.6  0.00000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.965054  n/a   
 
 
-
 
NC_010717  PXO_02709  3-ketoacyl-(acyl-carrier-protein) reductase  33.67 
 
 
247 aa  68.2  0.0000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0811228  n/a   
 
 
-
 
NC_007760  Adeh_1964  short-chain dehydrogenase/reductase SDR  31.28 
 
 
225 aa  68.2  0.0000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.31851  n/a   
 
 
-
 
NC_007802  Jann_1626  3-oxoacyl-[acyl-carrier-protein] reductase  33.33 
 
 
245 aa  67.8  0.0000000001  Jannaschia sp. CCS1  Bacteria  normal  0.0813857  normal 
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  28.44 
 
 
238 aa  68.2  0.0000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  30.53 
 
 
265 aa  68.2  0.0000000001  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_008786  Veis_0151  short chain dehydrogenase  30.17 
 
 
261 aa  68.2  0.0000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1337  3-ketoacyl-(acyl-carrier-protein) reductase  28.49 
 
 
238 aa  67.8  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.541378  normal 
 
 
-
 
NC_008740  Maqu_1867  3-oxoacyl-(acyl-carrier-protein) reductase  30.69 
 
 
247 aa  67.8  0.0000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.0330312  n/a   
 
 
-
 
NC_008541  Arth_1813  short-chain dehydrogenase/reductase SDR  32.18 
 
 
264 aa  68.2  0.0000000001  Arthrobacter sp. FB24  Bacteria  normal  0.0782028  n/a   
 
 
-
 
NC_008578  Acel_1151  3-oxoacyl-[acyl-carrier-protein] reductase  36.72 
 
 
234 aa  67.8  0.0000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.256582 
 
 
-
 
NC_012669  Bcav_0126  short-chain dehydrogenase/reductase SDR  34.43 
 
 
247 aa  67.4  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3541  short chain dehydrogenase  31.32 
 
 
270 aa  67.4  0.0000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.100637  normal  0.0669938 
 
 
-
 
NC_008825  Mpe_A3806  short chain dehydrogenase  30.9 
 
 
260 aa  67.4  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.187681 
 
 
-
 
NC_009440  Msed_1778  short-chain dehydrogenase/reductase SDR  31.87 
 
 
243 aa  67  0.0000000002  Metallosphaera sedula DSM 5348  Archaea  normal  0.809428  normal 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  26.76 
 
 
245 aa  67  0.0000000002  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_009921  Franean1_5810  short chain dehydrogenase  34.83 
 
 
278 aa  67.4  0.0000000002  Frankia sp. EAN1pec  Bacteria  normal  0.930868  normal  0.729107 
 
 
-
 
NC_009007  RSP_3889  Short-chain dehydrogenase/reductase  33.53 
 
 
236 aa  67.4  0.0000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.521289  n/a   
 
 
-
 
NC_009439  Pmen_1266  short-chain dehydrogenase/reductase SDR  28.95 
 
 
278 aa  67  0.0000000002  Pseudomonas mendocina ymp  Bacteria  normal  0.343225  normal 
 
 
-
 
NC_008541  Arth_2448  short chain dehydrogenase  34.39 
 
 
277 aa  67  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2407  3-oxoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
246 aa  67  0.0000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1177  Short-chain dehydrogenase/reductase SDR  32.43 
 
 
288 aa  66.2  0.0000000003  Burkholderia sp. 383  Bacteria  normal  normal  0.0954699 
 
 
-
 
NC_009921  Franean1_4317  short-chain dehydrogenase/reductase SDR  32.43 
 
 
234 aa  66.6  0.0000000003  Frankia sp. EAN1pec  Bacteria  normal  0.0991034  normal  0.658106 
 
 
-
 
NC_012912  Dd1591_0642  short-chain dehydrogenase/reductase SDR  31.67 
 
 
227 aa  66.6  0.0000000003  Dickeya zeae Ech1591  Bacteria  normal  0.222578  n/a   
 
 
-
 
NC_010172  Mext_1321  short-chain dehydrogenase/reductase SDR  30.77 
 
 
271 aa  67  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.318083 
 
 
-
 
NC_012880  Dd703_2717  short chain dehydrogenase  30.68 
 
 
276 aa  67  0.0000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0938  short chain dehydrogenase  26.29 
 
 
242 aa  66.2  0.0000000004  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3548  short-chain dehydrogenase/reductase SDR  29.61 
 
 
278 aa  66.2  0.0000000004  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0513  short-chain dehydrogenase/reductase SDR  34.38 
 
 
233 aa  66.2  0.0000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0147  3-ketoacyl-(acyl-carrier-protein) reductase  35 
 
 
451 aa  66.2  0.0000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.797973  decreased coverage  0.0000299289 
 
 
-
 
NC_002967  TDE0598  3-oxoacyl-(acyl-carrier-protein) reductase  30.11 
 
 
247 aa  65.9  0.0000000005  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  29 
 
 
259 aa  65.9  0.0000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_012669  Bcav_0516  short-chain dehydrogenase/reductase SDR  30.81 
 
 
244 aa  65.9  0.0000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0535711  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  31.16 
 
 
252 aa  65.9  0.0000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_008726  Mvan_4157  short-chain dehydrogenase/reductase SDR  28.65 
 
 
233 aa  65.5  0.0000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.981974  normal 
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  28.63 
 
 
256 aa  65.5  0.0000000007  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  27.65 
 
 
260 aa  65.5  0.0000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  30.8 
 
 
264 aa  65.5  0.0000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  32.83 
 
 
239 aa  65.1  0.0000000008  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  25.41 
 
 
264 aa  65.1  0.0000000008  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  26.5 
 
 
264 aa  65.1  0.0000000008  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  25.41 
 
 
264 aa  65.1  0.0000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1841  short chain dehydrogenase/reductase family oxidoreductase  28.26 
 
 
250 aa  65.1  0.0000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00165114  n/a   
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  27.11 
 
 
265 aa  65.1  0.0000000009  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  27.19 
 
 
231 aa  64.3  0.000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
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