| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6205 |
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| Symbol | |
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| ID | 7975095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 936135 |
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| End bp | 936959 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796775 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002948034 |
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| Protein GI | 239820849 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.218013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA AGAACAAGGT GGCCCTCGTG ACAGGGGCCT CGTCCGGCAT AGGCGAAGCC
ATTGCGCAGA AGCTGTCAAC GGCGGGCTAC AAGGTCTACG GCACCAGCCG GCGCGGCGGC
GGCGAGGTGG GCCAGCGAAC GTTCAAGATG CTGCCACTCG ATGTGACCCA GGACGCGTCG
GTCGATGCTG TGGTCCGGCA ACTGATCCAA CTGGAGGGCC GCATCGATCT GCTGGTCAAC
AACGCCGGCT TCGGGGTCGC TCCCGCCGGT GCGGAAGAGA GCTCGATTGC CCAGGCCCAG
GCCATCTTCG ACACCAACTT CTTCGGCATG GTGCGGATGA TCCGGTCCGT CGTACCGCAT
ATGCGTCGCC AGGGGAGTGG CCGCATCATC AACATTGGCT CCGTGGTGGG CTTCCTGCCT
TCGCCTTACA TGGCGCTGTA CTCCGCCACC AAGTACGCGG TCGCCGGCTA TTCGGAATCG
CTGGACCATG AACTGCGCAC GCAGGGCATT CGCGTCTCGG TGGTGGAGCC TCCCTACATC
AACACGCCGT TCGAAGCGAA CTCGATGCAG CCCGACACAC CGCTGGACAT GTACCGCGAG
ATTCGCGCGG GCATGGAGCA GCGGCTCAAG GATGGAATCG CGGGCGCAGA AGGCCCCGAG
GTGGTGGCCG ACATCGTGTT GAAGGCGGCC ACGGCCACGC AGCCCAAGAC CCACTACGCC
CCCGGCATGG CCGGCCGCCT GCGCCTGCTG CGCAGGTTCG CGCCGGCCAG CCTGCTGGAC
GCCGGGGTGC GCAAGGATCT TCGGCTCGAC GCGATAGCCC GCTAG
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| Protein sequence | MSTKNKVALV TGASSGIGEA IAQKLSTAGY KVYGTSRRGG GEVGQRTFKM LPLDVTQDAS
VDAVVRQLIQ LEGRIDLLVN NAGFGVAPAG AEESSIAQAQ AIFDTNFFGM VRMIRSVVPH
MRRQGSGRII NIGSVVGFLP SPYMALYSAT KYAVAGYSES LDHELRTQGI RVSVVEPPYI
NTPFEANSMQ PDTPLDMYRE IRAGMEQRLK DGIAGAEGPE VVADIVLKAA TATQPKTHYA
PGMAGRLRLL RRFAPASLLD AGVRKDLRLD AIAR
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