More than 300 homologs were found in PanDaTox collection
for query gene Gdia_3539 on replicon NC_011365
Organism: Gluconacetobacter diazotrophicus PAl 5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  100 
 
 
271 aa  536  1e-151  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  41.25 
 
 
255 aa  160  2e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  37.94 
 
 
255 aa  152  5.9999999999999996e-36  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2762  short-chain dehydrogenase/reductase SDR  40.7 
 
 
255 aa  143  3e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.836425  normal  0.228083 
 
 
-
 
NC_010172  Mext_2539  short-chain dehydrogenase/reductase SDR  39.85 
 
 
275 aa  140  1.9999999999999998e-32  Methylobacterium extorquens PA1  Bacteria  normal  0.0247795  normal 
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  36.72 
 
 
262 aa  137  2e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  36.72 
 
 
262 aa  137  2e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  36.72 
 
 
262 aa  137  2e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  36.72 
 
 
262 aa  137  2e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  36.72 
 
 
262 aa  137  2e-31  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  36.72 
 
 
262 aa  137  2e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1148  short-chain dehydrogenase/reductase SDR  39.11 
 
 
261 aa  136  4e-31  Ralstonia pickettii 12J  Bacteria  normal  0.0372396  normal 
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  36.33 
 
 
262 aa  136  4e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  35.61 
 
 
267 aa  133  3e-30  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3871  Short-chain dehydrogenase/reductase SDR  36.17 
 
 
263 aa  133  3e-30  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_3014  oxidoreductase, short-chain dehydrogenase/reductase family  35.77 
 
 
257 aa  132  5e-30  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.698047  n/a   
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  40.79 
 
 
256 aa  131  1.0000000000000001e-29  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2618  short-chain dehydrogenase/reductase SDR  36.6 
 
 
260 aa  129  6e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2467  short-chain dehydrogenase/reductase SDR  41.87 
 
 
255 aa  129  6e-29  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0928322 
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  35.71 
 
 
267 aa  127  1.0000000000000001e-28  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_010508  Bcenmc03_0749  short-chain dehydrogenase/reductase SDR  35.77 
 
 
261 aa  125  8.000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  36.65 
 
 
239 aa  123  4e-27  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_008542  Bcen2424_0780  short-chain dehydrogenase/reductase SDR  34.69 
 
 
251 aa  122  7e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  35.22 
 
 
239 aa  120  1.9999999999999998e-26  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3914  short-chain dehydrogenase/reductase SDR  37.25 
 
 
258 aa  118  9.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  36.17 
 
 
240 aa  114  2.0000000000000002e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1339  short chain dehydrogenase/reductase family oxidoreductase  35.71 
 
 
261 aa  113  4.0000000000000004e-24  Burkholderia thailandensis E264  Bacteria  normal  0.789963  n/a   
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  33.47 
 
 
238 aa  112  4.0000000000000004e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_011894  Mnod_1942  short-chain dehydrogenase/reductase SDR  42.86 
 
 
255 aa  112  8.000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.678089  n/a   
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  35.54 
 
 
245 aa  110  3e-23  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  32.64 
 
 
239 aa  108  6e-23  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0320  short-chain dehydrogenase/reductase SDR  42.29 
 
 
257 aa  108  1e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.25395  normal 
 
 
-
 
NC_011206  Lferr_2621  short-chain dehydrogenase/reductase SDR  34.9 
 
 
223 aa  107  2e-22  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  35.6 
 
 
261 aa  104  1e-21  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  32.62 
 
 
245 aa  104  1e-21  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  35.6 
 
 
261 aa  104  1e-21  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_008060  Bcen_0297  short-chain dehydrogenase/reductase SDR  32.3 
 
 
236 aa  104  2e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.450899  n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  35.24 
 
 
256 aa  102  5e-21  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  35.86 
 
 
249 aa  102  9e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  32.53 
 
 
238 aa  100  3e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  28.8 
 
 
242 aa  99  7e-20  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  30.86 
 
 
266 aa  98.2  1e-19  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2785  short chain dehydrogenase  34.73 
 
 
254 aa  97.4  2e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.73728  normal  0.939169 
 
 
-
 
NC_010622  Bphy_0185  short chain dehydrogenase  32.57 
 
 
256 aa  97.4  2e-19  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0445  short-chain dehydrogenase/reductase SDR  37.77 
 
 
267 aa  96.7  3e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.810235  normal  0.221701 
 
 
-
 
NC_008148  Rxyl_2452  short chain dehydrogenase  37.56 
 
 
250 aa  97.1  3e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  30.86 
 
 
266 aa  96.3  4e-19  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  30.47 
 
 
266 aa  96.3  4e-19  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  33.85 
 
 
344 aa  96.3  5e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  31.91 
 
 
241 aa  95.9  6e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4061  short chain dehydrogenase  35.9 
 
 
337 aa  95.9  6e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  34.18 
 
 
253 aa  95.5  8e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  28.11 
 
 
251 aa  95.5  9e-19  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  37.2 
 
 
250 aa  95.1  1e-18  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_009524  PsycPRwf_1175  short-chain dehydrogenase/reductase SDR  29.89 
 
 
254 aa  94.7  1e-18  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  30.86 
 
 
240 aa  94.4  2e-18  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  30.8 
 
 
275 aa  94  2e-18  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  31.94 
 
 
256 aa  93.2  4e-18  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4248  short chain dehydrogenase  32.44 
 
 
259 aa  93.2  4e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.215124 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  36.4 
 
 
250 aa  92  9e-18  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0470  short chain dehydrogenase  32.18 
 
 
259 aa  91.7  1e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  34.67 
 
 
321 aa  91.7  1e-17  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2273  short chain dehydrogenase  33.47 
 
 
246 aa  91.3  1e-17  Burkholderia phymatum STM815  Bacteria  normal  0.869936  normal  0.452458 
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  35.85 
 
 
251 aa  91.3  1e-17  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  29.46 
 
 
258 aa  92  1e-17  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1844  short-chain dehydrogenase/reductase SDR  37.36 
 
 
279 aa  91.7  1e-17  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.649512  normal 
 
 
-
 
NC_004347  SO_3382  short chain dehydrogenase/reductase family oxidoreductase  28.74 
 
 
266 aa  91.3  2e-17  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_3908  short-chain dehydrogenase/reductase SDR  37.24 
 
 
272 aa  91.3  2e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.106718  normal  0.186536 
 
 
-
 
NC_009338  Mflv_4313  short chain dehydrogenase  37.13 
 
 
290 aa  90.9  2e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  34.03 
 
 
263 aa  91.3  2e-17  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  30.12 
 
 
264 aa  90.5  3e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  33.77 
 
 
261 aa  90.1  3e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  29.15 
 
 
273 aa  90.5  3e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_012853  Rleg_5897  short chain dehydrogenase  34.22 
 
 
328 aa  90.1  3e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  30.28 
 
 
260 aa  90.5  3e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_008740  Maqu_1648  short-chain dehydrogenase/reductase SDR  29.05 
 
 
245 aa  89.7  4e-17  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0458  short-chain dehydrogenase/reductase SDR  36.78 
 
 
257 aa  89.4  5e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.706164 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  30.12 
 
 
263 aa  89  7e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_009524  PsycPRwf_0093  short-chain dehydrogenase/reductase SDR  32.16 
 
 
266 aa  89  8e-17  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  33.18 
 
 
257 aa  88.6  9e-17  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_003295  RSc0171  short chain dehydrogenase  31.12 
 
 
246 aa  88.2  1e-16  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.808724 
 
 
-
 
NC_009901  Spea_0885  short chain dehydrogenase  30.89 
 
 
250 aa  88.2  1e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6867  short chain dehydrogenase  29.81 
 
 
333 aa  88.6  1e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1311  short-chain dehydrogenase/reductase SDR  31.02 
 
 
266 aa  88.2  1e-16  Shewanella baltica OS223  Bacteria  normal  normal  0.978372 
 
 
-
 
NC_009379  Pnuc_0327  short-chain dehydrogenase/reductase SDR  30 
 
 
249 aa  88.2  1e-16  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.726547  n/a   
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  27.86 
 
 
277 aa  87.8  1e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  30.6 
 
 
243 aa  88.6  1e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_13470  short chain dehydrogenase  31.67 
 
 
251 aa  88.2  1e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  32.47 
 
 
261 aa  88.2  1e-16  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_009513  Lreu_0660  short-chain dehydrogenase/reductase SDR  32.52 
 
 
284 aa  88.2  1e-16  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  32.53 
 
 
265 aa  88.2  1e-16  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_011992  Dtpsy_3487  short chain dehydrogenase  33.73 
 
 
270 aa  87.4  2e-16  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  30.49 
 
 
245 aa  87.8  2e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  30.49 
 
 
245 aa  87.8  2e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_007777  Francci3_0818  short-chain dehydrogenase/reductase SDR  37.5 
 
 
278 aa  87.4  2e-16  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  32.5 
 
 
260 aa  87.8  2e-16  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  33.77 
 
 
262 aa  87.4  2e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1188  short chain dehydrogenase  30.61 
 
 
291 aa  87.8  2e-16  Psychrobacter cryohalolentis K5  Bacteria  normal  0.0152839  normal  0.145128 
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  32.5 
 
 
260 aa  87.4  2e-16  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  28.69 
 
 
277 aa  87.8  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
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