261 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dhaf_0005  CDS  NC_011830  4326  6260  1935  DNA gyrase, B subunit  YP_002456511  decreased coverage  0.00336478  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0051  CDS  NC_011830  49360  49692  333  hypothetical protein  YP_002456556  decreased coverage  0.0000000000000883025  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0054  CDS  NC_011830  51021  54551  3531  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein  YP_002456559  decreased coverage  0.00219154  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0070  CDS  NC_011830  70287  71456  1170  3D domain protein  YP_002456575  decreased coverage  0.0000000000504342  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0073  CDS  NC_011830  73896  74513  618  primase/topoisomerase like protein  YP_002456578  decreased coverage  0.0000000000589128  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0103  CDS  NC_011830  105627  106814  1188  SMC domain protein  YP_002456608  decreased coverage  0.000482249  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0119  CDS  NC_011830  125213  125770  558  peptidyl-tRNA hydrolase  YP_002456624  decreased coverage  0.0000476771  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0132  CDS  NC_011830  140173  141120  948  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_002456637  decreased coverage  0.000000000121654  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0165  CDS  NC_011830  179841  181361  1521  D-alanine--poly(phosphoribitol) ligase subunit 1  YP_002456669  decreased coverage  0.0000000000579194  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0173  CDS  NC_011830  189809  191488  1680  Na/Pi-cotransporter II-related protein  YP_002456677  decreased coverage  0.00842075  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0184  CDS  NC_011830  202890  203765  876  Sporulation protein YtxC  YP_002456688  decreased coverage  0.0000000000013669  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0194  CDS  NC_011830  217448  218164  717  transcriptional regulator, GntR family  YP_002456698  decreased coverage  0.00000195939  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0227  CDS  NC_011830  246568  247740  1173  major facilitator superfamily MFS_1  YP_002456731  decreased coverage  0.0000000142544  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0234  CDS  NC_011830  258605  258991  387  hypothetical protein  YP_002456738  decreased coverage  0.000287276  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0284  CDS  NC_011830  316583  317584  1002  Acetyl xylan esterase  YP_002456788  decreased coverage  0.0000000000137645  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0352  CDS  NC_011830  389157  392384  3228  carbamoyl phosphate synthase large subunit  YP_002456855  decreased coverage  0.000999114  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0392  CDS  NC_011830  434801  435277  477  transcriptional regulator, CarD family  YP_002456895  decreased coverage  0.0000000000000362697  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0415  CDS  NC_011830  460550  464017  3468  DNA-directed RNA polymerase subunit beta'  YP_002456918  decreased coverage  0.00696954  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0417  CDS  NC_011830  464462  464884  423  30S ribosomal protein S12  YP_002456920  decreased coverage  0.00000000000000726978  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0418  CDS  NC_011830  464936  465406  471  30S ribosomal protein S7  YP_002456921  decreased coverage  0.000000000000139374  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0422  CDS  NC_011830  469671  470300  630  50S ribosomal protein L3  YP_002456925  decreased coverage  0.0000000000000195061  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0452  CDS  NC_011830  484718  485761  1044  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002456955  decreased coverage  0.000000000191107  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0469  CDS  NC_011830  506430  507590  1161  isochorismate synthase  YP_002456972  decreased coverage  0.0000000527427  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0498  CDS  NC_011830  552410  553618  1209  major facilitator superfamily MFS_1  YP_002457001  decreased coverage  0.00000000266788  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0504  CDS  NC_011830  558457  559176  720  ABC transporter related  YP_002457007  decreased coverage  0.00000000930668  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0505  CDS  NC_011830  559173  559889  717  ABC-2 type transporter  YP_002457008  decreased coverage  0.0000000955112  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0515  CDS  NC_011830  565912  567783  1872  GAF modulated sigma54 specific transcriptional regulator, Fis family  YP_002457018  decreased coverage  0.0000178347  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0530  CDS  NC_011830  583370  584575  1206  major facilitator superfamily MFS_1  YP_002457033  decreased coverage  0.0000000000669622  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0567  CDS  NC_011830  625624  626466  843  diguanylate cyclase  YP_002457069  decreased coverage  0.0000000000000656533  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0638  CDS  NC_011830  712770  715490  2721  protein of unknown function DUF1156  YP_002457139  decreased coverage  0.00295664  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0666  CDS  NC_011830  746934  747572  639  hypothetical protein  YP_002457167  decreased coverage  0.00000000000033403  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0696  CDS  NC_011830  781894  783546  1653  reductive dehalogenase  YP_002457196  decreased coverage  0.0000940573  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0726  CDS  NC_011830  812395  812826  432  50S ribosomal protein L13  YP_002457226  decreased coverage  0.0000000000000578919  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0750  CDS  NC_011830  835344  835883  540  50S ribosomal protein L25/general stress protein Ctc  YP_002457250  decreased coverage  0.0000000000176111  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0768  CDS  NC_011830  853797  854558  762  protein of unknown function DUF1212  YP_002457268  decreased coverage  0.000000000000933244  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0774  CDS  NC_011830  861423  861938  516  transcriptional regulator, TetR family  YP_002457274  decreased coverage  0.00000000000000272103  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0815  CDS  NC_011830  908287  909123  837  band 7 protein  YP_002457314  decreased coverage  0.0000000000157152  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0832  CDS  NC_011830  925076  925891  816  protein of unknown function DUF147  YP_002457331  decreased coverage  0.0000000000526426  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0862  CDS  NC_011830  955460  955726  267  hypothetical protein  YP_002457361  decreased coverage  0.00000000000000770111  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0877  CDS  NC_011830  967161  967943  783  binding-protein-dependent transport systems inner membrane component  YP_002457376  decreased coverage  0.00000000112184  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0878  CDS  NC_011830  967977  968996  1020  NMT1/THI5 like domain protein  YP_002457377  decreased coverage  0.0000000508636  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0913  CDS  NC_011830  1003443  1004831  1389  hypothetical protein  YP_002457412  decreased coverage  0.0000000000265204  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0924  CDS  NC_011830  1017296  1018879  1584  Alkaline phosphatase  YP_002457423  decreased coverage  0.000000000229427  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0992  CDS  NC_011830  1076999  1078600  1602  hypothetical protein  YP_002457488  decreased coverage  0.00000000091608  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0996  CDS  NC_011830  1082991  1084355  1365  hydrogenase large subunit domain protein  YP_002457492  decreased coverage  0.0000000000195829  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0997  CDS  NC_011830  1084628  1084963  336  hypothetical protein  YP_002457493  decreased coverage  0.00000000000000204525  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_0998  CDS  NC_011830  1085175  1085723  549  BioY protein  YP_002457494  decreased coverage  0.0000000000000197008  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1012  CDS  NC_011830  1103103  1104776  1674  2-isopropylmalate synthase  YP_002457508  decreased coverage  0.00000269973  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1037  CDS  NC_011830  1132772  1133941  1170  DegT/DnrJ/EryC1/StrS aminotransferase  YP_002457533  decreased coverage  0.00000000000311878  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1062  CDS  NC_011830  1156391  1157638  1248  transposase IS116/IS110/IS902 family protein  YP_002457558  decreased coverage  0.00183617  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1092  CDS  NC_011830  1184895  1185416  522  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002457588  decreased coverage  0.0000000000530198  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1120  CDS  NC_011830  1214387  1215046  660  hypothetical protein  YP_002457616  decreased coverage  0.000000000085068  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1135  CDS  NC_011830  1229244  1230206  963  beta-lactamase domain protein  YP_002457631  decreased coverage  0.000000000000516269  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1248  CDS  NC_011830  1344985  1347102  2118  methyl-accepting chemotaxis sensory transducer  YP_002457741  decreased coverage  0.00000000912456  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1271  CDS  NC_011830  1367759  1369360  1602  extracellular solute-binding protein family 5  YP_002457764  decreased coverage  0.0000000259985  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1325  CDS  NC_011830  1430820  1432178  1359  amino acid permease-associated region  YP_002457817  decreased coverage  0.00135796  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1383  CDS  NC_011830  1488375  1489505  1131  Cystathionine gamma-synthase  YP_002457875  decreased coverage  0.00000000000104291  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1386  CDS  NC_011830  1491496  1492524  1029  Homoserine dehydrogenase  YP_002457878  decreased coverage  0.000000000000335812  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1406  CDS  NC_011830  1512641  1514275  1635  chaperonin GroEL  YP_002457898  decreased coverage  0.000000000472194  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1485  CDS  NC_011830  1580855  1581700  846  lipoprotein, YaeC family  YP_002457973  decreased coverage  0.00000000000129064  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1486  CDS  NC_011830  1581885  1582562  678  binding-protein-dependent transport systems inner membrane component  YP_002457974  decreased coverage  0.000000000000286975  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1507  CDS  NC_011830  1602520  1603203  684  transcriptional regulator, Crp/Fnr family  YP_002457995  decreased coverage  0.00368382  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1517  CDS  NC_011830  1615305  1617284  1980  DNA ligase, NAD-dependent  YP_002458005  decreased coverage  0.000000611736  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1518  CDS  NC_011830  1617403  1617687  285  aspartyl/glutamyl-tRNA amidotransferase subunit C  YP_002458006  decreased coverage  0.0000000000000177013  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1522  CDS  NC_011830  1622273  1623436  1164  trans-homoaconitate synthase  YP_002458010  decreased coverage  0.00000000000249206  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1537  CDS  NC_011830  1640276  1641586  1311  molybdopterin binding domain protein  YP_002458023  decreased coverage  0.000000576978  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1554  CDS  NC_011830  1658647  1659462  816  prolipoprotein diacylglyceryl transferase  YP_002458040  decreased coverage  0.0000000000000775379  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1555  CDS  NC_011830  1659535  1660740  1206  Saccharopine dehydrogenase  YP_002458041  decreased coverage  0.00000000000142738  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1559  CDS  NC_011830  1663705  1664298  594  hypothetical protein  YP_002458045  decreased coverage  0.000000000176677  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1562  CDS  NC_011830  1667637  1668446  810  Abortive infection protein  YP_002458048  decreased coverage  0.0000000000000889795  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1569  CDS  NC_011830  1676269  1677045  777  Methyltransferase type 12  YP_002458055  decreased coverage  0.00000138849  n/a    Desulfitobacterium hafniense DCB-2  Bacteria 
 
 
-
 
Dhaf_1570  CDS  NC_011830  1677033  1678193  1161  hypothetical protein