| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1789 |
|---|
| Symbol | |
|---|
| ID | 7258758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 1913791 |
|---|
| End bp | 1914387 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643561691 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_002458271 |
|---|
| Protein GI | 219667836 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000000000770501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTGCG CCAAAGTGGG GCGTTTAATT TTACAATTGC GCAAAGAAAA GGGTCTGACT
CAGCAACAGG TTGCGGATAT GCTGAATATC AGCAACAAGA CGATTTCCAA ATGGGAGCGC
GGCTTGGGCT GCCCCGATGT TACCCTCTGG TCCGGGCTTT CCGCAGTGCT GGGGGCGGAT
ATTCAAAAAA TGCTGGAGGG AAAGCTCGAT CCCAACTCAC CCGATGTGGG GAAGATTGAT
AAAACTCTAT TCTATGTCTG CCCAGCCTGC GGCAACATTC TGACCAGTAC GGGGAAAGCC
TCCCTCGCCT GCTGCGGACG AAAACTCCAG CCCTTAAAGC CGGTGCCCTG TACCGCAGAT
CATGCCATCA CCGTGGAGAA GCTGGACATG GACTATTTTA TTACCATTGA CCATGACATG
ATGAAAGACC ACTATATCCC CTTTGTGGCT TATGTACTTT ATGACAGAAT GCTGCTCACC
CGCTTGTATC CGGAGCAAAG CGCGGAAGTC CGTATTCCCA TACTGAAAAA GGCCGGCCAT
CTGTACGTGT ATTGTACAAG GCACGGCCTG CAAAAATATT CCGGTGTTTT TGAGTAA
|
|---|
| Protein sequence | MDCAKVGRLI LQLRKEKGLT QQQVADMLNI SNKTISKWER GLGCPDVTLW SGLSAVLGAD
IQKMLEGKLD PNSPDVGKID KTLFYVCPAC GNILTSTGKA SLACCGRKLQ PLKPVPCTAD
HAITVEKLDM DYFITIDHDM MKDHYIPFVA YVLYDRMLLT RLYPEQSAEV RIPILKKAGH
LYVYCTRHGL QKYSGVFE
|
|---|
| |