| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_0415 |
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| Symbol | |
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| ID | 7257382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | + |
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| Start bp | 460550 |
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| End bp | 464017 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643560334 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002456918 |
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| Protein GI | 219666483 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00696954 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTAGACG TCAACAATTT TGACCGGATG CGTATTGGTT TGGCTTCTCC GACGATGATC
CGTGAGTGGT CTCATGGAGA AGTCAGGAAG CCGGAAACGA TTAACTATAG AACCCTGAAA
CCGGAGCGGG AAGGACTCTT TTGCGAAAAG ATCTTTGGAC CAACCCGTGA CTGGGAGTGC
CATTGCGGCA AATACAAACG GGTTCGCTAT AAAGGCATTG TCTGTGACCG CTGCGGTGTG
GAGGTCACCC GTTCCAAGGT GCGTAGAGAG CGCATGGGCC ATATCGAACT GGCGGCTCCA
GTATCGCATA TCTGGTACTT CAAGGGTATT CCCAGCCGGA TGGGTCTTCT CCTGGATATG
TCTCCCCGTT CCCTGGAAAA GGTTCTTTAT TTCGTATCCT ACATCGTTAC CGATGCCGGG
GATACCTCGT TAATGAAAAA ACAACTCCTG ACGGAAACCG AATACCGGGA ATACCGTGAT
AAATACGGCA GCCGCTTCAA AGCCAGCATG GGTGCGGAAG CGATTAAGAT GCTTCTTGAG
GAAATGGACC TGGATAAGCT TAATGACGAG CTCCGGGTTG AATTGAAAGA GGTTTCCGGT
CAAAGGAAAA TCAGGGCCAT CCGCCGCCTG GAAGTGGTGG AAGCCTTTAA GGAATCCGGT
AACCGTCCTG AGTGGATGAT TATGGACGTG GTTCCCGTCA TTCCGCCGGA GCTCCGCCCT
ATGGTGCAGC TGGATGGCGG GCGGTTTGCC ACCTCCGACC TCAATGACCT TTACCGTCGG
GTGATCAACA GAAATAACCG TCTCAAGCGT CTTTTGGATC TGGGAGCGCC GGATATCATT
GTCCGCAACG AAAAACGGAT GCTCCAGGAG GCCGTGGATG CCTTGATCGA CAATGGCCGG
CGGGGACGTC CCGTTACCGG CCCCGGTAAC CGTCCTTTAA AATCCTTGAG TGATATGCTC
AAAGGCAAGC AAGGGCGTTT CCGGCAAAAC CTGCTGGGTA AACGGGTTGA TTATTCCGGT
CGTTCCGTTA TTGTGGTCGG ACCCAACCTG AGACTTCATC AATGCGGTCT GCCTAAAGAA
ATGGCCTTGG AGCTTTTCAA GCCCTTCGTC ATGAAAAAAC TGGTCAAGGA AGGCCATGCC
CATAATATCA AGAGCGCCAA GCGGATGGTG GAAAGGGTTC GTTCTGAAGT CTGGGACGTT
TTGGAAGAAG TGATCACCGA GCATCCTGTG CTGCTGAACC GGGCGCCAAC CCTTCACCGC
TTAGGGATTC AGGCTTTTGA GCCTGTTCTG GTTGAAGGGC GTGCCCTGCA GATCCATCCT
TTAGTCTGTA CCGCTTACAA TGCGGACTTC GACGGGGACC AAATGGCTGT TCACGTACCC
CTCTCCGCAG AAGCTCAGGC TGAAGCAAGA TTGCTGATGC TCTCCGCTCA TAATATTTTG
AATCCTAAAG ACGGCCGTCC CGTCGCTTCC CCCACACAGG ACATGGTTTT AGGCTCCTAC
TACCTGACCA TGGAACGTCC GGGAGCGCTG GGGGAAGGCA AGATCTTTAA GAATCGGGAT
GAAGCGGTTC TGGCCTATGA TACCAAGCAG GCAAACCTCC AGGCGATGAT TAAAGTCCGC
CAACCTAATG GTGAACTTTT GGAAACCACC ATTGGCAGGC TTATCTTTAA TTCGGTGATT
CCACCGGAGG TAGGCTATAT CAATGAAGTG GCCGGGAAAA AGGCCCTTAA CAATATCGTT
GCCAAATGCT ACCGCCTCGG CGGCTATAAA GCAACGGCCC AGCTCCTGGA CGGAATCAAG
AGCTTAGGGT TTAAATACTC CACCCGTGCC GGGATGACCG TTGGTCTTGC CGATATTACC
GTACCTGAAG AGAAGCGGCA GATTCTTGCC GATGCTGATG GCATGGTCAA TAAAACGGAG
CAGCAATTCC GCCGCGGTTT GATTACCGAC GAAGAGCGGT ATGAAAAAGT TATCGAGATC
TGGACCAAAG CCACGGACAC CGTGACCAAA GCCTTGATGC ACTCCTTGGA TAAATTCAAT
CCGGTGTACA TGATGGCCAC CTCCGGTGCC CGGGGTAATA TTCAGCAGCT TCGTCAGCTG
GCCGGGATGC GGGGACTGAT GGCGGATCCT TCGGGACGAA CCATCGAGTT GCCCATTAAG
GCTAACTTCC GTGAAGGCCT CACCGTTTTG GAGTATTTCA TCTCCTCCCA CGGAGCGCGG
AAAGGTCTGG CCGATACGGC ACTGCGGACC GCCGACTCCG GTTATCTTAC CCGCCGTCTT
GTGGACGTAT CTCAGGATGT CATTGTCCGG GATGAAGATT GCGGTACGAC CCAGGGTATT
ATGGTGGATG ATGTCAAGGA TGGTCCGGAA GTCATCGAAA AACTGGAAGA ACGTCTCGTG
GGCCGCTTCC TTTTGGAAGA TTTAAAGCAT CCTGAGACCG GGGAAATCCT GGCTACTGCC
GACAACGAGA TTACGGAAGA ACAAGCCCAT GATATCGCTG CTGTTTATGA TAATGTCACC
ATTCGTTCTG TCCTCACTTG CAAAACCCGC TACGGGGTGT GCCGCAAGTG CTACGGACGG
AATCTGGCCA CAGGCCATCA TGTGGAGATG GGAGAAGCCG TGGGCATCAT TGCTGCCCAA
TCCATCGGTG AGCCGGGAAC TCAGCTGACC ATGCGGACCT TCCATACCGG TGGTGTGGCC
GGGGACGATA TCACCCAAGG TTTGCCCCGT GTTGAGGAAC TTTTTGAAGC ACGCAAACCT
AAAGGCCAGG CCATCATTTC GGAAAATGAC GGTGTGGTCG CCATCCGCGA AGTCAAAGGC
CGCCGGGAAG TGGATGTTAT CAGTGATACG GAAGAACGGA TGACCTATAC GATACCCTAT
GGCTCCCGCT TGAAGGTTCG GGAAGGTCAC CGGATTGAAG CCGGCGATGA ACTGACTGAA
GGAAGCATCA ATCCCCATGA TATGCTTAAG GTTAAGGGAA TCCGCGGTGT CCAGGTTTAT
CTCCTGGGTG AAGTGCAAAG AGTTTACCGT CTGCAGGGTG TGGATATTAA CGATAAACAT
ATTGAGGTTA TGGTTCGCCA GATGCTCCGC AAGGTTAAAG TGGAAGAGGC CGGTGATACC
ACCCTCTTAC CCGGCGGCTT GATTGATGTC TTTGATTTCG AAGAAGAGAA CACCAAGGTG
ATTGCCGCCG GCGGTGAGCC TGCAGTAGCA AGACCGGTAC TTCTGGGCAT TACCAAAGCC
TCCCTGGCTA CGGACTCCTT CCTTTCTGCG GCATCCTTCC AGGAAACAAC CCGTGTTCTC
ACGGAGGCAG CCATCAAAGG AAAGGTCGAT CCTCTGCTGG GACTCAAGGA AAACGTCATC
ATCGGGAAGC TCATTCCGGC GGGTACAGGA ATGTCCCGTT ACCGGAATGT AAAAGTTATT
AATCTTGATG AAGAGCAAGT TGAAAATCTT GACAGTGTAA ATCCATGA
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| Protein sequence | MLDVNNFDRM RIGLASPTMI REWSHGEVRK PETINYRTLK PEREGLFCEK IFGPTRDWEC
HCGKYKRVRY KGIVCDRCGV EVTRSKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLLLDM
SPRSLEKVLY FVSYIVTDAG DTSLMKKQLL TETEYREYRD KYGSRFKASM GAEAIKMLLE
EMDLDKLNDE LRVELKEVSG QRKIRAIRRL EVVEAFKESG NRPEWMIMDV VPVIPPELRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPDII VRNEKRMLQE AVDALIDNGR
RGRPVTGPGN RPLKSLSDML KGKQGRFRQN LLGKRVDYSG RSVIVVGPNL RLHQCGLPKE
MALELFKPFV MKKLVKEGHA HNIKSAKRMV ERVRSEVWDV LEEVITEHPV LLNRAPTLHR
LGIQAFEPVL VEGRALQIHP LVCTAYNADF DGDQMAVHVP LSAEAQAEAR LLMLSAHNIL
NPKDGRPVAS PTQDMVLGSY YLTMERPGAL GEGKIFKNRD EAVLAYDTKQ ANLQAMIKVR
QPNGELLETT IGRLIFNSVI PPEVGYINEV AGKKALNNIV AKCYRLGGYK ATAQLLDGIK
SLGFKYSTRA GMTVGLADIT VPEEKRQILA DADGMVNKTE QQFRRGLITD EERYEKVIEI
WTKATDTVTK ALMHSLDKFN PVYMMATSGA RGNIQQLRQL AGMRGLMADP SGRTIELPIK
ANFREGLTVL EYFISSHGAR KGLADTALRT ADSGYLTRRL VDVSQDVIVR DEDCGTTQGI
MVDDVKDGPE VIEKLEERLV GRFLLEDLKH PETGEILATA DNEITEEQAH DIAAVYDNVT
IRSVLTCKTR YGVCRKCYGR NLATGHHVEM GEAVGIIAAQ SIGEPGTQLT MRTFHTGGVA
GDDITQGLPR VEELFEARKP KGQAIISEND GVVAIREVKG RREVDVISDT EERMTYTIPY
GSRLKVREGH RIEAGDELTE GSINPHDMLK VKGIRGVQVY LLGEVQRVYR LQGVDINDKH
IEVMVRQMLR KVKVEEAGDT TLLPGGLIDV FDFEEENTKV IAAGGEPAVA RPVLLGITKA
SLATDSFLSA ASFQETTRVL TEAAIKGKVD PLLGLKENVI IGKLIPAGTG MSRYRNVKVI
NLDEEQVENL DSVNP
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