More than 300 homologs were found in PanDaTox collection
for query gene Strop_4233 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009380  Strop_4233  binding-protein-dependent transport systems inner membrane component  100 
 
 
289 aa  536  1e-151  Salinispora tropica CNB-440  Bacteria  normal  normal  0.521193 
 
 
-
 
NC_008699  Noca_2070  binding-protein-dependent transport systems inner membrane component  43.63 
 
 
271 aa  155  6e-37  Nocardioides sp. JS614  Bacteria  normal  0.220299  n/a   
 
 
-
 
NC_009972  Haur_1234  binding-protein-dependent transport systems inner membrane component  42.56 
 
 
261 aa  135  7.000000000000001e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0182  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
268 aa  124  1e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0180  binding-protein-dependent transport systems inner membrane component  29.1 
 
 
283 aa  124  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.93964  normal 
 
 
-
 
NC_009668  Oant_3705  binding-protein-dependent transport systems inner membrane component  31.08 
 
 
270 aa  119  4.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.124345  n/a   
 
 
-
 
NC_009668  Oant_2805  ornithine carbamoyltransferase  31.05 
 
 
276 aa  104  2e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.465458  n/a   
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  28.94 
 
 
263 aa  100  3e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_013131  Caci_3597  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
276 aa  95.1  1e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.265711  normal 
 
 
-
 
NC_009439  Pmen_4203  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
284 aa  94  2e-18  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2374  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
270 aa  92.8  7e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1593  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
307 aa  92  9e-18  Burkholderia ambifaria AMMD  Bacteria  normal  0.0707466  n/a   
 
 
-
 
NC_010551  BamMC406_1612  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
307 aa  92  1e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.142547 
 
 
-
 
NC_011981  Avi_7452  ABC transporter membrane spanning protein  28.8 
 
 
271 aa  91.7  1e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_01830  carbohydrate ABC transporter membrane protein  31.58 
 
 
272 aa  90.9  2e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4848  ABC transporter, inner membrane subunit  29.63 
 
 
310 aa  90.9  2e-17  Burkholderia sp. 383  Bacteria  normal  0.432693  hitchhiker  0.000811543 
 
 
-
 
NC_013595  Sros_3493  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
316 aa  90.9  2e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.552575 
 
 
-
 
NC_011989  Avi_2178  ABC transporter membrane spanning protein  31.8 
 
 
288 aa  90.1  4e-17  Agrobacterium vitis S4  Bacteria  normal  0.178146  n/a   
 
 
-
 
NC_009620  Smed_3736  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
276 aa  89.7  5e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.282406  normal 
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  30.1 
 
 
264 aa  87  3e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
264 aa  87  3e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_013739  Cwoe_0569  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
268 aa  86.7  4e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.0474626  normal 
 
 
-
 
NC_008463  PA14_17620  polyamine transport protein PotC  31.3 
 
 
256 aa  86.7  4e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1532  polyamine transport protein PotC  31.3 
 
 
256 aa  86.7  4e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0789  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
260 aa  86.3  5e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.291957  n/a   
 
 
-
 
NC_010084  Bmul_1559  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
307 aa  86.3  6e-16  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.37571  normal  0.155307 
 
 
-
 
NC_010625  Bphy_6036  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
280 aa  85.9  7e-16  Burkholderia phymatum STM815  Bacteria  normal  0.475506  normal  0.0258331 
 
 
-
 
NC_010508  Bcenmc03_1659  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
307 aa  85.9  8e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.761483  normal  0.336927 
 
 
-
 
NC_008060  Bcen_1208  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
307 aa  85.9  8e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1687  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
307 aa  85.9  8e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4709  binding-protein-dependent transport systems inner membrane component  31.74 
 
 
278 aa  85.5  9e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3472  ABC spermidine/putrescine transporter, innermembrane subunit  30.38 
 
 
275 aa  85.1  0.000000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.84629 
 
 
-
 
NC_013159  Svir_07130  ABC-type spermidine/putrescine transport system, permease component II  30.74 
 
 
290 aa  85.5  0.000000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.396184  normal 
 
 
-
 
NC_010524  Lcho_2154  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
578 aa  84.7  0.000000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000173691 
 
 
-
 
NC_008242  Meso_4254  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
280 aa  84.7  0.000000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.0526069  n/a   
 
 
-
 
NC_013530  Xcel_0899  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
308 aa  83.6  0.000000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.408611  n/a   
 
 
-
 
NC_012912  Dd1591_2093  binding-protein-dependent transport systems inner membrane component  26.2 
 
 
277 aa  84  0.000000000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6902  binding-protein-dependent transport systems inner membrane component  30.49 
 
 
271 aa  84  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0353896 
 
 
-
 
NC_010627  Bphy_7801  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
284 aa  84  0.000000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.109099  normal 
 
 
-
 
NC_010511  M446_4679  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
287 aa  83.2  0.000000000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1937  binding-protein-dependent transport systems inner membrane component  27.56 
 
 
606 aa  83.2  0.000000000000005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1884  binding-protein-dependent transport systems inner membrane component  26.67 
 
 
277 aa  82.4  0.000000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3072  binding-protein-dependent transporter inner membrane protein  29.71 
 
 
244 aa  82.8  0.000000000000007  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4995  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
265 aa  82.4  0.000000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.887799  normal 
 
 
-
 
NC_007802  Jann_2401  binding-protein-dependent transport systems inner membrane component  27.86 
 
 
268 aa  82.4  0.000000000000008  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4689  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
276 aa  82.4  0.000000000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.363302  normal 
 
 
-
 
NC_013923  Nmag_3854  binding-protein-dependent transport systems inner membrane component  26.7 
 
 
273 aa  81.6  0.00000000000001  Natrialba magadii ATCC 43099  Archaea  normal  0.181021  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  29.71 
 
 
282 aa  82  0.00000000000001  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  29.71 
 
 
282 aa  82  0.00000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
282 aa  82  0.00000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1760  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
743 aa  81.6  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.67824  normal  0.0216249 
 
 
-
 
NC_013456  VEA_003666  probable permease of ABC transporter  30.59 
 
 
282 aa  81.6  0.00000000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_5055  binding-protein dependent transport system inner membrane protein  28.57 
 
 
264 aa  81.3  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.429894 
 
 
-
 
NC_010338  Caul_3949  ornithine carbamoyltransferase  26.1 
 
 
287 aa  80.9  0.00000000000002  Caulobacter sp. K31  Bacteria  normal  0.551991  normal 
 
 
-
 
NC_007948  Bpro_4359  binding-protein-dependent transport systems inner membrane component  29.09 
 
 
591 aa  81.3  0.00000000000002  Polaromonas sp. JS666  Bacteria  normal  0.184868  normal  0.311507 
 
 
-
 
NC_013223  Dret_2124  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
271 aa  80.9  0.00000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.493123 
 
 
-
 
NC_013510  Tcur_3393  binding-protein-dependent transport systems inner membrane component  28.22 
 
 
282 aa  80.9  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  25.62 
 
 
269 aa  80.9  0.00000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_009621  Smed_6247  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
266 aa  81.3  0.00000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.487966 
 
 
-
 
NC_007493  RSP_1886  ABC polyamine/opine transporter, inner membrane subunit  30.73 
 
 
302 aa  80.5  0.00000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0261044  n/a   
 
 
-
 
NC_010676  Bphyt_6153  binding-protein-dependent transport systems inner membrane component  29.17 
 
 
264 aa  80.1  0.00000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  27.92 
 
 
264 aa  80.5  0.00000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_009049  Rsph17029_0533  binding-protein-dependent transport systems inner membrane component  30.73 
 
 
302 aa  80.5  0.00000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  25.88 
 
 
264 aa  80.1  0.00000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_010623  Bphy_4446  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
301 aa  80.1  0.00000000000004  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6091  ABC transporter membrane spanning protein (polyamine)  27.98 
 
 
266 aa  80.1  0.00000000000004  Agrobacterium vitis S4  Bacteria  normal  0.417915  n/a   
 
 
-
 
NC_013510  Tcur_0448  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
275 aa  79.7  0.00000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1549  ornithine carbamoyltransferase  24.73 
 
 
284 aa  79.7  0.00000000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.899373  normal 
 
 
-
 
NC_011661  Dtur_0521  binding-protein-dependent transport systems inner membrane component  26.07 
 
 
270 aa  79.3  0.00000000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0669  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
302 aa  79.7  0.00000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.703183  decreased coverage  0.00406326 
 
 
-
 
NC_011988  Avi_5611  ABC transporter membrane spanning protein (sugar)  27.64 
 
 
269 aa  79.3  0.00000000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3122  binding-protein-dependent transport systems inner membrane component  26.8 
 
 
305 aa  79.3  0.00000000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.290341 
 
 
-
 
NC_008688  Pden_5050  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
262 aa  79.7  0.00000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5591  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
266 aa  79.7  0.00000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  25.88 
 
 
264 aa  79.3  0.00000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3714  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
264 aa  79.3  0.00000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.50413  n/a   
 
 
-
 
NC_011729  PCC7424_3606  Ornithine carbamoyltransferase  28.1 
 
 
288 aa  79.3  0.00000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.129461 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  25.23 
 
 
269 aa  79  0.00000000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_013526  Tter_2490  binding-protein-dependent transport systems inner membrane component  29.15 
 
 
279 aa  79  0.00000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.961495  n/a   
 
 
-
 
NC_011366  Rleg2_5746  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
278 aa  79  0.00000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.405999 
 
 
-
 
NC_008541  Arth_3322  binding-protein-dependent transport systems inner membrane component  27.74 
 
 
309 aa  79  0.00000000000009  Arthrobacter sp. FB24  Bacteria  normal  0.0903437  n/a   
 
 
-
 
NC_013172  Bfae_15400  carbohydrate ABC transporter membrane protein  27.76 
 
 
288 aa  79  0.0000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.287612  n/a   
 
 
-
 
NC_010676  Bphyt_4282  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
312 aa  78.6  0.0000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.377243 
 
 
-
 
NC_004311  BRA0719  ABC transporter, permease protein  30.08 
 
 
741 aa  78.6  0.0000000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1718  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
261 aa  78.2  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.367092  normal 
 
 
-
 
NC_005945  BAS1201  spermidine/putrescine ABC transporter permease  23.98 
 
 
266 aa  78.6  0.0000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.440242  n/a   
 
 
-
 
NC_005957  BT9727_1179  spermidine/putrescine ABC transporter, permease  23.98 
 
 
266 aa  78.6  0.0000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1181  spermidine/putrescine ABC transporter, permease  23.98 
 
 
266 aa  78.6  0.0000000000001  Bacillus cereus E33L  Bacteria  normal  0.0752832  n/a   
 
 
-
 
NC_012850  Rleg_3985  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
279 aa  79  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0828593 
 
 
-
 
NC_009486  Tpet_1536  binding-protein-dependent transport systems inner membrane component  25.78 
 
 
265 aa  78.2  0.0000000000001  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.00509999  n/a   
 
 
-
 
NC_010159  YpAngola_A2450  putative spermidine/putrescine ABC transporter permease  25 
 
 
278 aa  78.2  0.0000000000001  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0675  ABC transporter, permease protein  30.16 
 
 
741 aa  78.6  0.0000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2170  binding-protein-dependent transport systems inner membrane component  25 
 
 
278 aa  78.2  0.0000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.260813  n/a   
 
 
-
 
NC_009523  RoseRS_1644  ornithine carbamoyltransferase  26.78 
 
 
285 aa  78.6  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.574087 
 
 
-
 
NC_008043  TM1040_3397  binding-protein-dependent transport systems inner membrane component  26.09 
 
 
287 aa  79  0.0000000000001  Ruegeria sp. TM1040  Bacteria  normal  0.141396  normal  0.659935 
 
 
-
 
NC_010511  M446_3856  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
270 aa  78.6  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2370  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
274 aa  78.2  0.0000000000001  Chelativorans sp. BNC1  Bacteria  normal  0.560014  n/a   
 
 
-
 
NC_009708  YpsIP31758_2058  putative spermidine/putrescine ABC transporter, permease protein  25 
 
 
278 aa  78.2  0.0000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.650732  n/a   
 
 
-
 
NC_011773  BCAH820_1377  spermidine/putrescine ABC transporter, permease protein  23.98 
 
 
266 aa  78.6  0.0000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000768374 
 
 
-
 
NC_008786  Veis_2280  binding-protein-dependent transport systems inner membrane component  30.41 
 
 
280 aa  78.2  0.0000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.326107  normal 
 
 
-
 
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