More than 300 homologs were found in PanDaTox collection
for query gene Rpic_3411 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010682  Rpic_3411  two component transcriptional regulator, LuxR family  100 
 
 
194 aa  385  1e-106  Ralstonia pickettii 12J  Bacteria  normal  normal  0.608689 
 
 
-
 
NC_012856  Rpic12D_3065  two component transcriptional regulator, LuxR family  100 
 
 
194 aa  385  1e-106  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4334  two component LuxR family transcriptional regulator  42.13 
 
 
209 aa  145  2.0000000000000003e-34  Burkholderia phymatum STM815  Bacteria  normal  0.255025  normal 
 
 
-
 
NC_010676  Bphyt_6866  two component transcriptional regulator, LuxR family  45.05 
 
 
202 aa  145  4.0000000000000006e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.140006  normal  0.169631 
 
 
-
 
NC_007952  Bxe_B2906  two component LuxR family transcriptional regulator  43.24 
 
 
203 aa  137  7e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2101  LuxR family DNA-binding response regulator  33.86 
 
 
207 aa  116  3e-25  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00862279  normal  0.220235 
 
 
-
 
NC_009512  Pput_3638  two component LuxR family transcriptional regulator  34.22 
 
 
205 aa  115  3e-25  Pseudomonas putida F1  Bacteria  normal  normal  0.489861 
 
 
-
 
NC_010322  PputGB1_1643  two component LuxR family transcriptional regulator  35.29 
 
 
205 aa  115  3.9999999999999997e-25  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.003137  normal 
 
 
-
 
NC_010501  PputW619_1620  two component LuxR family transcriptional regulator  35.64 
 
 
206 aa  114  6.9999999999999995e-25  Pseudomonas putida W619  Bacteria  normal  normal  0.0222153 
 
 
-
 
NC_007492  Pfl01_3974  two component LuxR family transcriptional regulator  34.21 
 
 
208 aa  114  8.999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  36.41 
 
 
234 aa  113  2.0000000000000002e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_007005  Psyr_2114  LuxR response regulator receiver  34.54 
 
 
212 aa  112  3e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.22828 
 
 
-
 
NC_008463  PA14_12780  putative two-component response regulator  34.72 
 
 
209 aa  112  3e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000000436161  normal 
 
 
-
 
NC_009656  PSPA7_1160  putative two-component response regulator  35.05 
 
 
209 aa  111  6e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0122525  n/a   
 
 
-
 
NC_009656  PSPA7_2093  putative two-component response regulator  35.29 
 
 
207 aa  110  2.0000000000000002e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_00430  putative two-component response regulator  36.7 
 
 
207 aa  110  2.0000000000000002e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.247974 
 
 
-
 
NC_008463  PA14_24710  putative two-component response regulator  35.29 
 
 
207 aa  109  2.0000000000000002e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0036  putative two-component response regulator  36.7 
 
 
207 aa  110  2.0000000000000002e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.035019  n/a   
 
 
-
 
NC_009832  Spro_1286  two component LuxR family transcriptional regulator  38.17 
 
 
213 aa  108  5e-23  Serratia proteamaculans 568  Bacteria  normal  normal  0.172682 
 
 
-
 
NC_010322  PputGB1_4322  two component LuxR family transcriptional regulator  35.08 
 
 
207 aa  108  6e-23  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  38.5 
 
 
220 aa  107  9.000000000000001e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  34.69 
 
 
242 aa  107  1e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1090  LuxR family DNA-binding response regulator  34.74 
 
 
207 aa  106  2e-22  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1131  two component LuxR family transcriptional regulator  34.74 
 
 
236 aa  106  2e-22  Pseudomonas putida F1  Bacteria  normal  0.796271  normal  0.799889 
 
 
-
 
NC_009708  YpsIP31758_2160  LuxR family DNA-binding response regulator  35.71 
 
 
210 aa  106  3e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  36.65 
 
 
235 aa  105  3e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010465  YPK_2269  two component LuxR family transcriptional regulator  35.71 
 
 
210 aa  106  3e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  34.54 
 
 
221 aa  105  5e-22  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4151  DNA-binding response regulator, LuxR family  34.38 
 
 
208 aa  105  6e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.35782  n/a   
 
 
-
 
NC_007005  Psyr_3890  LuxR response regulator receiver  34.38 
 
 
208 aa  105  6e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_010159  YpAngola_A2113  LuxR family DNA-binding response regulator  35.71 
 
 
210 aa  104  6e-22  Yersinia pestis Angola  Bacteria  normal  normal  0.616678 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  30.1 
 
 
223 aa  104  7e-22  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
CP001509  ECD_02279  DNA-binding response regulator in two-component regulatory system with EvgS  29.35 
 
 
204 aa  104  9e-22  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1288  two component transcriptional regulator, LuxR family  29.35 
 
 
204 aa  104  9e-22  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2506  DNA-binding transcriptional activator EvgA  29.35 
 
 
204 aa  104  9e-22  Escherichia coli HS  Bacteria  hitchhiker  0.00265649  n/a   
 
 
-
 
NC_010501  PputW619_1119  two component LuxR family transcriptional regulator  34.03 
 
 
208 aa  104  9e-22  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3600  DNA-binding transcriptional activator EvgA  29.35 
 
 
204 aa  104  9e-22  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0441797 
 
 
-
 
NC_010468  EcolC_1300  DNA-binding transcriptional activator EvgA  29.35 
 
 
204 aa  104  9e-22  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  34.36 
 
 
213 aa  104  9e-22  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_012892  B21_02240  hypothetical protein  29.35 
 
 
204 aa  104  9e-22  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2655  DNA-binding transcriptional activator EvgA  29.35 
 
 
204 aa  104  9e-22  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2519  DNA-binding transcriptional activator EvgA  29.35 
 
 
204 aa  104  9e-22  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2528  two component LuxR family transcriptional regulator  35.68 
 
 
204 aa  103  2e-21  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0522002 
 
 
-
 
NC_007492  Pfl01_4515  two component LuxR family transcriptional regulator  32.81 
 
 
208 aa  103  2e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00786387 
 
 
-
 
NC_011094  SeSA_A0594  transcriptional regulator FimZ  32.63 
 
 
210 aa  102  2e-21  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.627077  hitchhiker  0.00790766 
 
 
-
 
NC_011080  SNSL254_A0602  transcriptional regulator FimZ  32.63 
 
 
210 aa  102  2e-21  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.379869  normal  0.0923244 
 
 
-
 
NC_011083  SeHA_C0659  transcriptional regulator FimZ  32.63 
 
 
210 aa  102  2e-21  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.611229  normal 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  37.77 
 
 
206 aa  103  2e-21  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  35.23 
 
 
217 aa  103  2e-21  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_011149  SeAg_B0595  transcriptional regulator FimZ  32.63 
 
 
210 aa  102  3e-21  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.447967  n/a   
 
 
-
 
NC_009512  Pput_2350  two component LuxR family transcriptional regulator  34.59 
 
 
204 aa  102  3e-21  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0598  transcriptional regulator FimZ  32.63 
 
 
210 aa  102  3e-21  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.110504 
 
 
-
 
NC_002947  PP_3412  LuxR family DNA-binding response regulator  34.59 
 
 
204 aa  102  4e-21  Pseudomonas putida KT2440  Bacteria  normal  normal  0.338288 
 
 
-
 
NC_010658  SbBS512_E2738  DNA-binding transcriptional activator EvgA  28.8 
 
 
204 aa  102  4e-21  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1808  two component LuxR family transcriptional regulator  29.73 
 
 
207 aa  102  5e-21  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.000516369  n/a   
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  33.16 
 
 
217 aa  100  9e-21  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  36.84 
 
 
222 aa  101  9e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_010501  PputW619_2781  two component LuxR family transcriptional regulator  30.81 
 
 
204 aa  100  2e-20  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  32.84 
 
 
228 aa  99.8  2e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  31.15 
 
 
208 aa  99.8  2e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_011663  Sbal223_0174  two component transcriptional regulator, LuxR family  33.51 
 
 
208 aa  100  2e-20  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1400  two component LuxR family transcriptional regulator  35.48 
 
 
205 aa  99.8  3e-20  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  32.46 
 
 
215 aa  99  4e-20  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  32.46 
 
 
215 aa  99  4e-20  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  32.63 
 
 
213 aa  99  4e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  32.46 
 
 
215 aa  99  4e-20  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  30.16 
 
 
214 aa  99  4e-20  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  29.79 
 
 
214 aa  98.6  5e-20  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  32.46 
 
 
215 aa  98.6  5e-20  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  33.16 
 
 
216 aa  98.2  6e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  32.35 
 
 
228 aa  98.2  7e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  31.86 
 
 
228 aa  98.2  7e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  35.11 
 
 
214 aa  98.2  7e-20  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
NC_009784  VIBHAR_05894  two component transcriptional regulator  30.39 
 
 
202 aa  97.8  8e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  29.17 
 
 
215 aa  97.8  9e-20  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000282  putative two-component response regulator  31.32 
 
 
202 aa  97.8  9e-20  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  32.81 
 
 
208 aa  97.8  9e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00485  predicted DNA-binding transcriptional regulator  30.77 
 
 
210 aa  97.1  1e-19  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  32.46 
 
 
235 aa  97.1  1e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  32.46 
 
 
216 aa  97.1  1e-19  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0610  transcriptional regulator FimZ  30.77 
 
 
210 aa  97.1  1e-19  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00490  hypothetical protein  30.77 
 
 
210 aa  97.1  1e-19  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3087  transcriptional regulator FimZ  30.77 
 
 
210 aa  97.1  1e-19  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_3078  two component transcriptional regulator, LuxR family  30.77 
 
 
210 aa  96.7  2e-19  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0304  two component LuxR family transcriptional regulator  32.09 
 
 
207 aa  96.7  2e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0580  transcriptional regulator FimZ  30.77 
 
 
210 aa  96.7  2e-19  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6075  two-component response regulator  32.11 
 
 
216 aa  96.3  2e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0577  transcriptional regulator FimZ  30.77 
 
 
210 aa  96.7  2e-19  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0636  transcriptional regulator FimZ  30.77 
 
 
210 aa  96.7  2e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.931873  normal  0.250092 
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  33.85 
 
 
214 aa  96.7  2e-19  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  31 
 
 
226 aa  95.9  3e-19  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  31.41 
 
 
215 aa  96.3  3e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  31.41 
 
 
215 aa  96.3  3e-19  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  33.66 
 
 
232 aa  95.5  4e-19  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  30.89 
 
 
217 aa  95.5  4e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  31.41 
 
 
215 aa  95.5  4e-19  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  31.09 
 
 
216 aa  95.5  4e-19  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  31.05 
 
 
212 aa  95.5  4e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  31.41 
 
 
215 aa  95.5  5e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  31.41 
 
 
215 aa  95.1  6e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
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