Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2101 |
Symbol | |
ID | 1044953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 2399656 |
End bp | 2400279 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637145515 |
Product | LuxR family DNA-binding response regulator |
Protein accession | NP_744251 |
Protein GI | 26988826 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00862279 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.220235 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAACATGC ACTCCATATT TATCGTTGAC GACCATCCGG TGATTCGCCT GGCCGTGCGT ATGCTGCTGG AAAACCAGAA TTACAAGATT GTCGGCGAGT CGGACAACGG CGTAGACGCC ATGCAGATGA TCCGCGAGAG CAACCCCGAC CTGGTCATTC TCGACATCAG CATCCCCAAG CTAGACGGCC TGGAGGTGCT GGCCCGCTTT CAGAGCATGG CCCTGCCCTT GAAGGTTCTG GTGCTGACTG CACAGTCCCC GGCATTGTTT GCCGTACGTT GCATGCACTC GGGCGCGGCG GGTTATGTCT GCAAACAGGA AGACCTGAGC GAACTGCTCA GTGCAATCAA GGCTGTACTG GCCGGTTATA ACTACTTCCC CAGCCAGGCA ATAAAAAACA ACCAGACCAC CGACAGTGAC CTGCAACTTT TCCGCCAGGT AAATGACCGC GAACTGATGG TGCTTCAACT TTTCGCCCAA GGCCGCAGCA ACAAGGAAAT TGCCAAGGGC ATGTTTCTCA GCAGCAAGAC TGTCAGTACC TACAAGAAGC GCCTCATGCA CAAACTGCAA GTCAATACGC TGGTCGATCT GATCGAGATG GCCAAGCGCA ACGCGCTGGT CTGA
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Protein sequence | MNMHSIFIVD DHPVIRLAVR MLLENQNYKI VGESDNGVDA MQMIRESNPD LVILDISIPK LDGLEVLARF QSMALPLKVL VLTAQSPALF AVRCMHSGAA GYVCKQEDLS ELLSAIKAVL AGYNYFPSQA IKNNQTTDSD LQLFRQVNDR ELMVLQLFAQ GRSNKEIAKG MFLSSKTVST YKKRLMHKLQ VNTLVDLIEM AKRNALV
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