| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2114 |
|---|
| Symbol | |
|---|
| ID | 3367628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 2473029 |
|---|
| End bp | 2473667 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637652463 |
|---|
| Product | LuxR response regulator receiver |
|---|
| Protein accession | YP_235195 |
|---|
| Protein GI | 66045354 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.22828 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATGGA ATATGAACTC AGTTTTTATC ATCGACGACC ATCCGGTCAT CCGGATGGCG
GTAAGAATGC TTCTGGAGAA CGAAAATTAT GAGGTGGTCG GCGAGACCGA TAACGGTGTC
GACGCCATGC AAATGGTGCG TGAGTGCATG CCCGACCTGA TCATCCTCGA CATCAGCATT
CCCAAGCTCG ACGGCCTCGA GGTGCTGGCC CGCTTCAATA CGATGGGGCT GCCCTCCAAG
ATTCTGGTGC TGACGTCGCA GACCCCCAAC CTGTTTGCCA TTCGCTGCAT GCAATCGGGC
GCCTCGGGTT ATGTGTGCAA ACAGGAAGAC CTCAGTGAAC TGCTCAGTTC GGTGAAAGCG
GTATTATCCG GCTACAATTA CTTTCCCAGT CAGGCGTTGA CGTGCGCAGT TCGTGAAGAT
GGCCAGACCG ACGAGCTGGA GCTGTTCAAG TTGGTCAATG ACCGTGAACT GATGGTATTG
CAGTTATTTG CCCAGGGCCG TTCCAACAAG GAAATAGCCA AGGGCATGTT TCTCAGTAAC
AAAACCGTCA GTACTTACAA AACGCGGCTT ATGCAAAAAC TGAAAACCAG AACCTTGGTA
GAACTTATCG AGATGGCAAA ACGCAACGCG CTAGTGTGA
|
|---|
| Protein sequence | MEWNMNSVFI IDDHPVIRMA VRMLLENENY EVVGETDNGV DAMQMVRECM PDLIILDISI
PKLDGLEVLA RFNTMGLPSK ILVLTSQTPN LFAIRCMQSG ASGYVCKQED LSELLSSVKA
VLSGYNYFPS QALTCAVRED GQTDELELFK LVNDRELMVL QLFAQGRSNK EIAKGMFLSN
KTVSTYKTRL MQKLKTRTLV ELIEMAKRNA LV
|
|---|
| |