More than 300 homologs were found in PanDaTox collection
for query gene Pput_2287 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_2287  response regulator receiver protein  100 
 
 
176 aa  358  3e-98  Pseudomonas putida F1  Bacteria  normal  0.0246688  normal  0.814678 
 
 
-
 
NC_002947  PP_3484  response regulator receiver protein  99.43 
 
 
176 aa  356  8e-98  Pseudomonas putida KT2440  Bacteria  normal  0.180993  normal  0.620188 
 
 
-
 
NC_010322  PputGB1_2453  response regulator receiver protein  97.73 
 
 
176 aa  352  1e-96  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2462  response regulator receiver protein  93.18 
 
 
176 aa  337  5.9999999999999996e-92  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1981  response regulator receiver domain-containing protein  72.73 
 
 
177 aa  268  2.9999999999999997e-71  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.366163 
 
 
-
 
NC_012560  Avin_29160  Response regulator, CheY-like protein  44.64 
 
 
126 aa  97.4  1e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.310967  n/a   
 
 
-
 
NC_010002  Daci_1091  two component heavy metal response transcriptional regulator  40.94 
 
 
232 aa  82.4  0.000000000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0323  two component transcriptional regulator  36.94 
 
 
227 aa  82.4  0.000000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3085  CheA signal transduction histidine kinase  36.07 
 
 
2212 aa  79  0.00000000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.284349 
 
 
-
 
NC_011830  Dhaf_1005  two component transcriptional regulator, winged helix family  33.96 
 
 
227 aa  78.2  0.00000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000255449  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  37.38 
 
 
448 aa  77.8  0.00000000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1771  two component transcriptional regulator  39.81 
 
 
244 aa  77  0.0000000000001  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3049  two component transcriptional regulator  34.58 
 
 
224 aa  77.4  0.0000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  36.7 
 
 
464 aa  77.4  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3778  two component transcriptional regulator, winged helix family  32.1 
 
 
232 aa  77  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0820994  normal 
 
 
-
 
NC_009636  Smed_0234  response regulator receiver protein  37.17 
 
 
121 aa  77  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.695764  normal  0.176079 
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  33.09 
 
 
223 aa  75.9  0.0000000000002  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  36.7 
 
 
463 aa  76.6  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6208  two component transcriptional regulator, winged helix family  40 
 
 
226 aa  76.3  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  32.09 
 
 
227 aa  76.6  0.0000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  36.7 
 
 
464 aa  75.9  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_004347  SO_2426  DNA-binding response regulator  39.02 
 
 
237 aa  75.9  0.0000000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  36.52 
 
 
126 aa  75.9  0.0000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.102048 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  39.47 
 
 
236 aa  75.9  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  34.38 
 
 
240 aa  75.5  0.0000000000004  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_009439  Pmen_0794  two component transcriptional regulator  37.96 
 
 
232 aa  75.1  0.0000000000005  Pseudomonas mendocina ymp  Bacteria  normal  0.665518  normal 
 
 
-
 
NC_010682  Rpic_1760  two component heavy metal response transcriptional regulator, winged helix family  37.74 
 
 
225 aa  74.7  0.0000000000006  Ralstonia pickettii 12J  Bacteria  normal  0.133831  normal  0.402692 
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  37.74 
 
 
225 aa  74.7  0.0000000000006  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_010086  Bmul_4245  multi-sensor hybrid histidine kinase  39.23 
 
 
654 aa  74.7  0.0000000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2215  two component heavy metal response transcriptional regulator, winged helix family  39.47 
 
 
228 aa  74.7  0.0000000000007  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2497  DNA-binding response regulator  32.41 
 
 
228 aa  74.7  0.0000000000007  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  35.51 
 
 
448 aa  74.7  0.0000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  36.43 
 
 
257 aa  74.3  0.0000000000008  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3207  response regulator receiver protein  34.29 
 
 
124 aa  74.3  0.0000000000008  Ruegeria sp. TM1040  Bacteria  normal  0.138724  normal 
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  33.83 
 
 
486 aa  74.3  0.0000000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  35.51 
 
 
235 aa  73.6  0.000000000001  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  35.51 
 
 
235 aa  73.6  0.000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  35.51 
 
 
235 aa  73.6  0.000000000001  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  35.51 
 
 
235 aa  73.6  0.000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_013946  Mrub_1103  two component transcriptional regulator, winged helix family  35.24 
 
 
227 aa  73.9  0.000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4198  PAS/PAC sensor hybrid histidine kinase  33.33 
 
 
1185 aa  73.6  0.000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.996958 
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  40.19 
 
 
452 aa  73.6  0.000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_013739  Cwoe_3240  two component transcriptional regulator, winged helix family  36.63 
 
 
229 aa  72.8  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.713085  normal  0.151148 
 
 
-
 
NC_010717  PXO_01607  PilL protein  33.61 
 
 
2301 aa  72.8  0.000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.68194  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  33.12 
 
 
237 aa  73.2  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_009524  PsycPRwf_2155  CheA signal transduction histidine kinase  34.75 
 
 
1609 aa  72.8  0.000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_013131  Caci_2021  two component transcriptional regulator, winged helix family  36.84 
 
 
236 aa  73.2  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.48021  normal  0.282737 
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_009380  Strop_0624  two component transcriptional regulator  36.45 
 
 
240 aa  72.8  0.000000000002  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18360  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  34.11 
 
 
239 aa  73.6  0.000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  35.51 
 
 
235 aa  72.8  0.000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_013132  Cpin_3739  two component transcriptional regulator, winged helix family  38.05 
 
 
266 aa  73.2  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.453489  normal  0.0202921 
 
 
-
 
NC_014212  Mesil_2637  two component transcriptional regulator, winged helix family  35.24 
 
 
227 aa  73.2  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3475  two component, sigma54 specific, transcriptional regulator, Fis family  33.05 
 
 
453 aa  72.8  0.000000000003  Geobacter sp. M21  Bacteria  n/a    normal  0.0804749 
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  37.74 
 
 
225 aa  72.8  0.000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1307  DNA-binding heavy metal response regulator  38.68 
 
 
225 aa  72.4  0.000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.150056  n/a   
 
 
-
 
NC_010718  Nther_0916  two component transcriptional regulator, winged helix family  33.33 
 
 
234 aa  72.8  0.000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0276045  hitchhiker  9.727110000000001e-18 
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  38.68 
 
 
225 aa  72.4  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_008261  CPF_2811  DNA-binding response regulator  31.48 
 
 
228 aa  72.4  0.000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2412  response regulator receiver protein  29.91 
 
 
123 aa  72.4  0.000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.18168  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  37.5 
 
 
195 aa  72.4  0.000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  35.25 
 
 
228 aa  72.8  0.000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_3535  response regulator receiver protein  38.94 
 
 
134 aa  72.4  0.000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.283754  normal  0.0368978 
 
 
-
 
NC_007005  Psyr_1127  heavy metal response regulator  37.74 
 
 
225 aa  72  0.000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.294376  normal  0.216529 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  36.7 
 
 
466 aa  72  0.000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_010625  Bphy_5630  histidine kinase  41.35 
 
 
714 aa  72  0.000000000004  Burkholderia phymatum STM815  Bacteria  normal  normal  0.11737 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  38.26 
 
 
235 aa  72  0.000000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0509  two component transcriptional regulator  31.48 
 
 
232 aa  72  0.000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163629  normal 
 
 
-
 
NC_008322  Shewmr7_2074  two component transcriptional regulator  36.59 
 
 
226 aa  72  0.000000000004  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00164535  hitchhiker  0.00140528 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  34.55 
 
 
456 aa  72  0.000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  31.08 
 
 
242 aa  72.4  0.000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  34.65 
 
 
246 aa  72  0.000000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  38.39 
 
 
236 aa  72  0.000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_007492  Pfl01_4663  two component heavy metal response transcriptional regulator  39.62 
 
 
225 aa  72  0.000000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.180214  normal  0.242183 
 
 
-
 
NC_007760  Adeh_1992  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
460 aa  71.6  0.000000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  39.23 
 
 
406 aa  71.6  0.000000000005  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  40.59 
 
 
458 aa  71.6  0.000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_009921  Franean1_6496  two component transcriptional regulator  39.62 
 
 
231 aa  71.6  0.000000000005  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00132974  normal  0.338684 
 
 
-
 
NC_008146  Mmcs_4590  two component transcriptional regulator  37.38 
 
 
239 aa  72  0.000000000005  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  29.73 
 
 
243 aa  71.6  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_008321  Shewmr4_1904  two component transcriptional regulator  36.59 
 
 
226 aa  71.6  0.000000000005  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00970528  hitchhiker  0.0000356769 
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  34.03 
 
 
230 aa  71.6  0.000000000005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_009077  Mjls_4973  two component transcriptional regulator  37.38 
 
 
239 aa  72  0.000000000005  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1020  putative CheA signal transduction histidine kinase  32 
 
 
1725 aa  71.6  0.000000000005  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4678  two component transcriptional regulator  37.38 
 
 
239 aa  72  0.000000000005  Mycobacterium sp. KMS  Bacteria  normal  0.337028  normal  0.895878 
 
 
-
 
NC_007511  Bcep18194_B1729  two component heavy metal response transcriptional regulator  37.74 
 
 
231 aa  71.6  0.000000000006  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  35.51 
 
 
236 aa  71.2  0.000000000006  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4315  two component heavy metal response transcriptional regulator  36.79 
 
 
232 aa  71.2  0.000000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.767231  normal  0.644171 
 
 
-
 
NC_013510  Tcur_3942  response regulator receiver protein  35 
 
 
163 aa  71.2  0.000000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0896  CheA signal transduction histidine kinase  32 
 
 
1725 aa  71.6  0.000000000006  Xylella fastidiosa M23  Bacteria  normal  0.720203  n/a   
 
 
-
 
NC_011146  Gbem_3413  two component, sigma54 specific, transcriptional regulator, Fis family  32.2 
 
 
453 aa  71.2  0.000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4419  two component, sigma54 specific, Fis family transcriptional regulator  35.85 
 
 
448 aa  71.6  0.000000000006  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_04920  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  33.86 
 
 
222 aa  71.2  0.000000000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4290  two component heavy metal response transcriptional regulator  37.74 
 
 
231 aa  71.6  0.000000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5538  PAS/PAC sensor hybrid histidine kinase  37.39 
 
 
760 aa  71.6  0.000000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00762207 
 
 
-
 
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