Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1904 |
Symbol | |
ID | 4252478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2270720 |
End bp | 2271400 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638118515 |
Product | two component transcriptional regulator |
Protein accession | YP_734035 |
Protein GI | 113970242 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00970528 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000356769 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTAGAA TACTGTTAGT CGATGATGAT CCTTTATTCA GAGTTTGGTT AACTGATGCG CTGAAAACAC AGGGACATGA GGTTGAATGT GCCATAAATG GCATTGAAGG GCTGAAACGG ATCCGCAGTT TTATGCCCGA CATTATCATG CTCGATCTGA TCATGCCGCA GATGGATGGT TTTTCGCTTT TAGAGGCGAG GGACTGTATG ACACCGATCA TGATGCTTTC TGCCCGTGAC AATGAGGAAG ATAGGATCAG ATGTTATGAG CTTGGCGCGG ATGATTTTTT GACGAAACCC TTTAGCATTA AAGAGTTATT AGTCCGTTTG CATGCCTTAG AGCGGCGATT GATATCGCGC CCACCAGAGC AAATGGCCAT AGAGCAGGCA ACAATTCAGC CGGTCAAATT CGATGAAACG GCCTATAGGA TCACTATCGG AAAAAATGCC GTAGAACTCA CGCAAACCGA GTTTAGGCTG TTTAAATACC TGTTTGAGCG TAAGGGGCAA GTGATCACTA AGCAAGAACT GCAAAAATCT GTATTGCAGA AGGAGCTAGG GCGCTTTGAC CGCAATTTAG ATATGCATAT CAGTAACACG CGGCGCAAAC TGGCAAATAC CCGTTTACCG CGGACATTAA TCAACACTGT CCGTGGTCAA GGATACAGTT TTTCTGCTTG A
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Protein sequence | MSRILLVDDD PLFRVWLTDA LKTQGHEVEC AINGIEGLKR IRSFMPDIIM LDLIMPQMDG FSLLEARDCM TPIMMLSARD NEEDRIRCYE LGADDFLTKP FSIKELLVRL HALERRLISR PPEQMAIEQA TIQPVKFDET AYRITIGKNA VELTQTEFRL FKYLFERKGQ VITKQELQKS VLQKELGRFD RNLDMHISNT RRKLANTRLP RTLINTVRGQ GYSFSA
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