Gene Slin_4198 details

Gene Information

• Locus tag: Slin_4198
• ID: 8727957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 5055258
• End bp: 5058815
• Gene Length: 3558 bp
• Protein Length: 1185 aa
• Translation table: 11
• GC content: 54%
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_003388982
• Protein GI: 284039052

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 0.996958
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTGCAA CCACATCCCC TCAGCTCTCT GTTGACGAAT ACCGAGAATT GATAGCGTCT 
TTTACCCAGG CTATCTGGGA AGCGGACTCG CAGGGAACAA TCCGTACCGA TTCCCCCAGT 
TGGCGAGCCT ACACGGGCCA GCCCCTCAAC GAATGGCTGG ATGAAAGTTG GCTGGCGGCT 
GTTCACCCCG ATAATCGAGC CGAGGCCCTT AGCCAGTGGC AGGACGCCAT TCAACAGCAA 
GTTCCCTTCA ACGCCGAGCT CAGATTGCGC AATGCCGACG GCGGCTGGCG GTGGACCAAC 
GTGCGGGCTA CCCAGGTTCT CCATCCCGAT GGGTCAGTCA AAAAGTGGGT AGGACTCATT 
ATTGACATCA GCGATAAGAA GAAAGCCGAA GAAACGCGTC AACAGCACCA GTCCCGTCGG 
GAAGAAAGAA GTAATGTATT GCTGCAGTCT ACTGAAGAAG TGGCCCATAC GGGCAGCTAC 
GAAGCAAACC TACTGGCGGA CACCATGCGC TTTTCCGACG GTATGTATCG GCTCTTTGGG 
GAAGAACCGG GAGCAATCGA CCCCTCGACG GCCTGGATTG ACAGTCGGTC GAATCCCGAG 
GATGTCCAGC CGATCAGCCA AACCCTGAAT GCGGCCATTG CTACGCTAAA GCCTTATTAT 
TACCGGCGCA GAATTTATCG AAAAGACGGC GAACTCCGTC AGTTGGAAGC GCATGGCAGA 
GTTGTCGGCG ACCAGACCGG CAAGGCCGTG AAGCTGATTG GCCTGGTTCA GGATATTACC 
GAACGCCATC GGGTAGAACA GGAGCTTACC CAAACCAAAG CACTCCTACA GACCATTTTC 
GATACCTCTC CCAATTCGAT TACGGCTTAC ACGCCCGTGT ATACGGATGA CGTAATAATC 
GATTTCAAAA TTGTTCTTGC CAATGCCTTC ACGCAGCGAA CCACCGGGTT TAACCCTACC 
GGGCAGTTGC TTACCCAAAC CTTCCCAACC GCTCAGCATA ATGGCTTGCT GACCAAGTTA 
AAGGAGGTAA TGGAGCACAA GAAAAGGCAT GACTTTGAGC TGTGGTACGA AGGCGAAGGG 
ATGCACCACT GGTTTCGTGT GATTGCCGTT CCAATGGACG AAATGGTGCT GGTAACTACA 
GAAGACATCA CCGAGCGTCG GCAAGTCGAA GCGGAAATTC TTCGCCTGAA TGATGAAATG 
GCCAGGAAAG CGACGGATCG ATACTACTCG CTGTTCAACA CCATCGAAGA AGGCATGAAT 
GTGCTGGAAC TGGTTTACGA TGACAACGGC AAACCGATAG ACTTTCGCTG GCTGGAGGTG 
AATCCGGCGT TCGAAAAAAT TACCGGTCTA ACCAACGTGG CCGGTAAGCT GGTCAGCGAA 
ACTATCCCAA CGGAACAATA CTGGTTTGAC ACCTACGATC GGGTCATAAA AACTGGTGAA 
CCTCTCCGCT ACGAAAATTA CCATGCAGGC CTTCAGCAAT GGTTTCGAAC GCATACATCA 
CGAATAGGGG GTGCGGGGAC CCTGCTCGTA GCGAATGTGT TTGAGGATAT CACGCAACAG 
AAACGCCAGG AAGCTAACCT GGCGTTTCTG GCCAACCTGA CGGTTGATCT TGCTCCTTTT 
GACTCCGTAG ACAGGCTCAT GGAAATGGCG GGCAGTCGCA TCGTCGAACA TCTCCGCCTG 
TCGCACTGCA CATTTGTAGC CATCAATCCG GAGGCTGATG AATGCACGAT TCTACACGAC 
AGTTCCCCCA CGGGGCTCAC TGTGCTAACC GGCACGCTCA AACTGGCAGA CTTTCATACT 
GATGAGGAAA ACAGGCTGCT GGCCGGGGGA AACGCCATGA TTGTGAACAA TATCATGGAC 
GGAACCCGTT CAGCCGAACA AATAGCCTCA TTCAGGGCCA TCGACGTGGC GTCGTTGGTC 
AACACCCCTA TTGTCATTAA TGGGCGATGG GTGTTTGACC TGGGCGTAAC CCGCGACACC 
CCGTCTGTCT GGCTCCCGGA CGAGATCGAA CTACTACAGC AGGTTGCCAG CCGCATCTGG 
CTCAGGATAG AACGGACCCG CGCCGAACAA GCCATCCGCC AGTCTCAGGA GCGGCTGCAG 
AACGCAATTG CCATTGAAAC GGTAGGTGTA ATTTTCTTCG ACCGGCAGGG TATCATTCAG 
GATGCCAATG CCGCTTTTGA GAAGATGAGT GGCTTGAGCC ACGAGGAACT GGCGAGCGGA 
CAAGTTGGGT GGGATAAACT TACCCCGCCC GAGTTCATAG GCGTCAGCCA GATGGCTATG 
AACGAGTTGA TAAACCAGGG CCAGAGTATA CCCTACGAAA AGGAGTACAT CCGTCCGGAT 
GCGTCAAGGT GGTGGGGCCT GTCTGCTGGC AAACGACTCA GTGAACACGA AATGGTGGAG 
TTTGTGATTG ATATTACCGA AAGCAAACGT ACTCAGCAAG CCCTTCAGGA AGCCGTTCAG 
CGTAAAGACA ACTTTCTGGC CATGCTGGCG CACGAACTGC GCAACCCAAT GGCCACCATC 
CGTTCGGGGC TACAAGCACT GAACCTGGCC CATACCGATG CCCAGCGGCA ATCGACGGTG 
GCCATGATGA GCCGACAAAC CGATCATCTG GTGCGCATGG TCGATGATTT GCTGGACGTG 
AACCGCATTA CCCGGGGTAA AGTCGAACTC AAAAAAGAAC GAATTAATCT GGTCGATGTG 
GTACAGCAGG GCGTTGACAG TATCCAGCCG CAATTTCAGC AGCAAAACAA AACGCTTCAT 
GTCGATCTGC CCGCCGTCCC CATTGTCATG GATGGCGATG CCACCCGGCT CAATCAAGTC 
GTTACTAACC TCCTAACCAA TGGTGTTCGC TACAGCGGTG AAGAAGGTGA AGTCTGGCTG 
AGTCTGACGC ACCAGCATCA GGAAGCCATT CTTCAGGTGC GGGATAACGG GATTGGCCTG 
GCAGCCGATC AGCTCTCGGC TATTTTTGAG CCGTTTGTAC AGGCCGACCA ATCGTTGGCG 
CGCTCGCAGG GCGGTTTAGG GCTGGGGCTA ACCCTGGTGA ACGAATTGGT GGCGTTGCAT 
GGAGGCAAGG TAGCGGTCTG GAGCCAGGGA CTTGGGACGG GCAGTACGTT TACGGTGCAC 
CTGCCCACGT TACCTGCCGA TTCGGTTTTA CCCACCGAAG CCCCCCGGCA AGCGAAGGTC 
CCCTCAACAC TCCGGCGCGT TCTGGTTATC GATGACAATG CCGATGCGGC CTTAACCCTG 
TCCATGCTGT TGAAGATAAA AGGCTATGAG GTTTATACCA GGCACAGCGG CCAGGCGGGT 
ATTGAAGCCG CAGAAAGCCT GCAACCTGGG GCCATCCTGC TCGACATTGG TATGCCCGAT 
ATGGATGGCT ACGAAACCTG TCGGCTAATT CGTCAGCAGC CCTGGGGCCA GTCTATGCCA 
ATCATCGCCC TGACGGGTTA CGGGCAGCCG GAAGACCGGC AACGCACGAG GGAAGCCGGT 
TTTACAGGGC ACCTGGTAAA ACCCGTGGAT ATGGGTCAGT TAACGGACTT GTTGACGAGC 
CTGCTGGCAG CCGACTAA 

 

Protein sequence

MSATTSPQLS VDEYRELIAS FTQAIWEADS QGTIRTDSPS WRAYTGQPLN EWLDESWLAA 
VHPDNRAEAL SQWQDAIQQQ VPFNAELRLR NADGGWRWTN VRATQVLHPD GSVKKWVGLI 
IDISDKKKAE ETRQQHQSRR EERSNVLLQS TEEVAHTGSY EANLLADTMR FSDGMYRLFG 
EEPGAIDPST AWIDSRSNPE DVQPISQTLN AAIATLKPYY YRRRIYRKDG ELRQLEAHGR 
VVGDQTGKAV KLIGLVQDIT ERHRVEQELT QTKALLQTIF DTSPNSITAY TPVYTDDVII 
DFKIVLANAF TQRTTGFNPT GQLLTQTFPT AQHNGLLTKL KEVMEHKKRH DFELWYEGEG 
MHHWFRVIAV PMDEMVLVTT EDITERRQVE AEILRLNDEM ARKATDRYYS LFNTIEEGMN 
VLELVYDDNG KPIDFRWLEV NPAFEKITGL TNVAGKLVSE TIPTEQYWFD TYDRVIKTGE 
PLRYENYHAG LQQWFRTHTS RIGGAGTLLV ANVFEDITQQ KRQEANLAFL ANLTVDLAPF 
DSVDRLMEMA GSRIVEHLRL SHCTFVAINP EADECTILHD SSPTGLTVLT GTLKLADFHT 
DEENRLLAGG NAMIVNNIMD GTRSAEQIAS FRAIDVASLV NTPIVINGRW VFDLGVTRDT 
PSVWLPDEIE LLQQVASRIW LRIERTRAEQ AIRQSQERLQ NAIAIETVGV IFFDRQGIIQ 
DANAAFEKMS GLSHEELASG QVGWDKLTPP EFIGVSQMAM NELINQGQSI PYEKEYIRPD 
ASRWWGLSAG KRLSEHEMVE FVIDITESKR TQQALQEAVQ RKDNFLAMLA HELRNPMATI 
RSGLQALNLA HTDAQRQSTV AMMSRQTDHL VRMVDDLLDV NRITRGKVEL KKERINLVDV 
VQQGVDSIQP QFQQQNKTLH VDLPAVPIVM DGDATRLNQV VTNLLTNGVR YSGEEGEVWL 
SLTHQHQEAI LQVRDNGIGL AADQLSAIFE PFVQADQSLA RSQGGLGLGL TLVNELVALH 
GGKVAVWSQG LGTGSTFTVH LPTLPADSVL PTEAPRQAKV PSTLRRVLVI DDNADAALTL 
SMLLKIKGYE VYTRHSGQAG IEAAESLQPG AILLDIGMPD MDGYETCRLI RQQPWGQSMP 
IIALTGYGQP EDRQRTREAG FTGHLVKPVD MGQLTDLLTS LLAAD