More than 300 homologs were found in PanDaTox collection
for query gene Plim_3821 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014148  Plim_3821  response regulator receiver  100 
 
 
264 aa  531  1e-150  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.169085  n/a   
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  44.35 
 
 
236 aa  199  5e-50  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal 
 
 
-
 
NC_007498  Pcar_0768  two component signal transduction response regulator  40.49 
 
 
236 aa  186  4e-46  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000566504  n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  40.49 
 
 
235 aa  179  4e-44  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  38.46 
 
 
235 aa  177  1e-43  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  39.53 
 
 
241 aa  177  1e-43  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.154165 
 
 
-
 
NC_008009  Acid345_4168  two component transcriptional regulator  40.71 
 
 
237 aa  177  2e-43  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.426048 
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  39.38 
 
 
243 aa  176  5e-43  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_002939  GSU1879  DNA-binding response regulator  39.02 
 
 
238 aa  175  6e-43  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  36.96 
 
 
239 aa  174  1.9999999999999998e-42  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  38.62 
 
 
240 aa  173  1.9999999999999998e-42  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  40.32 
 
 
256 aa  173  1.9999999999999998e-42  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  36.96 
 
 
239 aa  174  1.9999999999999998e-42  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  39.37 
 
 
235 aa  172  3.9999999999999995e-42  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  39.37 
 
 
235 aa  172  5e-42  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  39.37 
 
 
235 aa  172  5.999999999999999e-42  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  40.49 
 
 
229 aa  172  6.999999999999999e-42  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  39.37 
 
 
235 aa  171  9e-42  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  39.37 
 
 
235 aa  171  9e-42  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  39.37 
 
 
235 aa  171  9e-42  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  39.37 
 
 
235 aa  171  9e-42  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  39.37 
 
 
235 aa  171  9e-42  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  39.37 
 
 
235 aa  171  9e-42  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  39.37 
 
 
235 aa  171  9e-42  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  39.68 
 
 
234 aa  171  9e-42  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  39.27 
 
 
234 aa  171  1e-41  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  38.87 
 
 
226 aa  171  1e-41  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  38.98 
 
 
235 aa  171  2e-41  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  40.32 
 
 
235 aa  169  4e-41  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal 
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  38.82 
 
 
234 aa  168  8e-41  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  37.1 
 
 
238 aa  167  1e-40  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  35.89 
 
 
230 aa  167  1e-40  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  38.82 
 
 
235 aa  167  2e-40  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  36.18 
 
 
236 aa  167  2e-40  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  39.76 
 
 
236 aa  166  2.9999999999999998e-40  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  38.87 
 
 
238 aa  166  2.9999999999999998e-40  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  39.13 
 
 
230 aa  166  4e-40  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  37.9 
 
 
230 aa  166  5e-40  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_010003  Pmob_0875  two component transcriptional regulator  36.14 
 
 
242 aa  166  5e-40  Petrotoga mobilis SJ95  Bacteria  decreased coverage  0.000486966  n/a   
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  41.2 
 
 
235 aa  165  5.9999999999999996e-40  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  38.96 
 
 
228 aa  164  1.0000000000000001e-39  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  35.34 
 
 
230 aa  164  1.0000000000000001e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  38.87 
 
 
237 aa  164  2.0000000000000002e-39  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal 
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  35.63 
 
 
225 aa  164  2.0000000000000002e-39  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  36.84 
 
 
230 aa  164  2.0000000000000002e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  37.94 
 
 
240 aa  164  2.0000000000000002e-39  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  37.65 
 
 
239 aa  164  2.0000000000000002e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4054  two component transcriptional regulator  36.29 
 
 
226 aa  163  3e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.271916 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  38.06 
 
 
229 aa  162  4.0000000000000004e-39  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  39.37 
 
 
237 aa  162  4.0000000000000004e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1838  two component transcriptional regulator  34.14 
 
 
239 aa  162  5.0000000000000005e-39  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00000194698  n/a   
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  37.2 
 
 
234 aa  162  7e-39  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  37.75 
 
 
229 aa  161  8.000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0819  two component transcriptional regulator, winged helix family  37.4 
 
 
246 aa  161  8.000000000000001e-39  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  36.18 
 
 
239 aa  161  8.000000000000001e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  37.75 
 
 
231 aa  161  9e-39  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  37.25 
 
 
226 aa  161  1e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  37.65 
 
 
239 aa  160  1e-38  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  37.65 
 
 
239 aa  160  1e-38  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  36.55 
 
 
234 aa  161  1e-38  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  34.55 
 
 
228 aa  160  2e-38  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  36.55 
 
 
226 aa  160  2e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  34.55 
 
 
228 aa  160  2e-38  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  34.55 
 
 
228 aa  160  2e-38  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  34.68 
 
 
229 aa  159  3e-38  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  37.65 
 
 
239 aa  159  4e-38  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  37.65 
 
 
239 aa  159  4e-38  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  37.65 
 
 
239 aa  159  4e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  37.65 
 
 
239 aa  159  4e-38  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  37.65 
 
 
239 aa  159  4e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  37.65 
 
 
239 aa  159  4e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  36.99 
 
 
233 aa  159  5e-38  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  35.34 
 
 
229 aa  159  5e-38  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  36.18 
 
 
233 aa  159  6e-38  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  36.18 
 
 
233 aa  159  6e-38  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  36.84 
 
 
239 aa  158  8e-38  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  34.96 
 
 
227 aa  157  1e-37  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  34.15 
 
 
228 aa  157  1e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_005957  BT9727_0255  DNA-binding response regulator  36.55 
 
 
237 aa  158  1e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0258  response regulator  36.55 
 
 
237 aa  157  1e-37  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  37.01 
 
 
234 aa  157  1e-37  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  37.01 
 
 
234 aa  157  1e-37  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  37.4 
 
 
240 aa  157  1e-37  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  35.22 
 
 
232 aa  157  1e-37  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  37.35 
 
 
231 aa  157  1e-37  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  37.75 
 
 
226 aa  157  1e-37  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2741  winged helix family two component transcriptional regulator  35.86 
 
 
250 aa  157  2e-37  'Nostoc azollae' 0708  Bacteria  normal  0.0957275  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  34.55 
 
 
228 aa  157  2e-37  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0316  DNA-binding response regulator  35.74 
 
 
237 aa  157  2e-37  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1256  alkaline phosphatase synthesis transcriptional regulatory protein PhoP  37.25 
 
 
236 aa  156  3e-37  Staphylococcus epidermidis RP62A  Bacteria  normal  0.577358  n/a   
 
 
-
 
NC_011773  BCAH820_0317  DNA-binding response regulator  36.14 
 
 
237 aa  156  3e-37  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS0273  DNA-binding response regulator  36.14 
 
 
237 aa  156  3e-37  Bacillus anthracis str. Sterne  Bacteria  normal  0.484752  n/a   
 
 
-
 
NC_007530  GBAA_0287  DNA-binding response regulator  36.14 
 
 
237 aa  156  3e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.42222  n/a   
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  36.55 
 
 
235 aa  156  3e-37  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  34.82 
 
 
226 aa  155  4e-37  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  38.31 
 
 
232 aa  155  5.0000000000000005e-37  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  38.37 
 
 
235 aa  155  5.0000000000000005e-37  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_011886  Achl_0850  two component transcriptional regulator, winged helix family  38.15 
 
 
226 aa  155  7e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  36.84 
 
 
230 aa  155  8e-37  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4998  DNA-binding response regulator  35.74 
 
 
237 aa  155  8e-37  Bacillus cereus G9842  Bacteria  normal  0.709524  normal 
 
 
-
 
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