More than 300 homologs were found in PanDaTox collection
for query gene Dde_3356 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_3356  histone-like DNA-binding protein  100 
 
 
95 aa  187  4e-47  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.860208  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  51.58 
 
 
91 aa  86.3  1e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0045  histone family protein DNA-binding protein  47.37 
 
 
90 aa  84  6e-16  Sphingomonas wittichii RW1  Bacteria  decreased coverage  0.00000165888  normal 
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  51.58 
 
 
92 aa  83.2  0.000000000000001  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  50.53 
 
 
90 aa  82.4  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_008789  Hhal_0562  integration host factor subunit beta  43.16 
 
 
102 aa  82  0.000000000000002  Halorhodospira halophila SL1  Bacteria  normal  0.399271  n/a   
 
 
-
 
NC_008576  Mmc1_2824  nucleoid protein Hbs  47.92 
 
 
91 aa  81.6  0.000000000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.669113  normal 
 
 
-
 
NC_008576  Mmc1_2054  histone family protein DNA-binding protein  47.92 
 
 
91 aa  81.6  0.000000000000003  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00333504  normal  0.0104655 
 
 
-
 
NC_007963  Csal_3249  histone-like DNA-binding protein  47.37 
 
 
90 aa  80.9  0.000000000000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0440  histone family protein DNA-binding protein  45.83 
 
 
91 aa  80.1  0.00000000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  46.32 
 
 
92 aa  79  0.00000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_012918  GM21_3008  histone family protein DNA-binding protein  45.26 
 
 
91 aa  79  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.341575 
 
 
-
 
NC_008751  Dvul_2207  histone family protein DNA-binding protein  48.42 
 
 
91 aa  79  0.00000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.976216  normal  0.483194 
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  50.53 
 
 
90 aa  79.3  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_011311  VSAL_p840_66  DNA-binding protein HU-alpha  47.37 
 
 
91 aa  79.3  0.00000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0113448  n/a   
 
 
-
 
NC_011369  Rleg2_1250  histone family protein DNA-binding protein  46.32 
 
 
91 aa  78.6  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  46.32 
 
 
90 aa  78.2  0.00000000000003  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  48.94 
 
 
90 aa  78.2  0.00000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_2799  histone family protein DNA-binding protein  47.37 
 
 
91 aa  78.2  0.00000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  47.87 
 
 
90 aa  77.8  0.00000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  45.26 
 
 
91 aa  77.8  0.00000000000005  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  48.42 
 
 
90 aa  77.4  0.00000000000005  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_007643  Rru_A1553  histone-like DNA-binding protein  46.32 
 
 
91 aa  77  0.00000000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1613  integration host factor, beta subunit  41.05 
 
 
104 aa  76.6  0.00000000000009  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  44.21 
 
 
90 aa  77  0.00000000000009  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  48.42 
 
 
90 aa  76.6  0.0000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_007643  Rru_A0292  integration host factor, beta subunit  44.21 
 
 
100 aa  76.3  0.0000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.167242  n/a   
 
 
-
 
NC_007794  Saro_1362  histone-like DNA-binding protein  45.26 
 
 
90 aa  76.6  0.0000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.102123  n/a   
 
 
-
 
NC_009439  Pmen_4401  nucleoid protein HU alpha subunit  46.32 
 
 
90 aa  76.3  0.0000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.177499 
 
 
-
 
NC_012850  Rleg_1341  histone family protein DNA-binding protein  45.26 
 
 
91 aa  76.3  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  43.16 
 
 
91 aa  75.5  0.0000000000002  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_007492  Pfl01_5600  nucleoid protein HU alpha subunit  46.32 
 
 
91 aa  75.9  0.0000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.375895  normal 
 
 
-
 
NC_009379  Pnuc_2026  histone family protein DNA-binding protein  41.05 
 
 
106 aa  75.5  0.0000000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.00000760647  n/a   
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  44.21 
 
 
91 aa  75.9  0.0000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_008340  Mlg_0932  integration host factor subunit beta  41.05 
 
 
100 aa  75.5  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.802461  normal 
 
 
-
 
NC_008463  PA14_70600  HU family DNA-binding protein  46.32 
 
 
90 aa  75.9  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  43.16 
 
 
91 aa  75.5  0.0000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  46.81 
 
 
90 aa  75.1  0.0000000000003  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  47.37 
 
 
90 aa  75.5  0.0000000000003  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  44.21 
 
 
90 aa  75.5  0.0000000000003  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_010501  PputW619_0160  histone family protein DNA-binding protein  47.37 
 
 
99 aa  75.1  0.0000000000003  Pseudomonas putida W619  Bacteria  normal  0.982339  normal  0.332624 
 
 
-
 
NC_010322  PputGB1_5361  histone family protein DNA-binding protein  47.37 
 
 
101 aa  74.7  0.0000000000004  Pseudomonas putida GB-1  Bacteria  normal  normal  0.322215 
 
 
-
 
NC_013131  Caci_8047  histone family protein DNA-binding protein  42.11 
 
 
232 aa  74.7  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.278826  normal 
 
 
-
 
NC_009636  Smed_0875  histone family protein DNA-binding protein  44.21 
 
 
90 aa  74.3  0.0000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal 
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  50 
 
 
94 aa  73.9  0.0000000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_010531  Pnec_1743  histone family protein DNA-binding protein  40 
 
 
106 aa  74.3  0.0000000000006  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  50 
 
 
94 aa  73.9  0.0000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_007520  Tcr_1199  integration host factor, beta subunit  38.95 
 
 
108 aa  73.9  0.0000000000007  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  45.74 
 
 
90 aa  73.9  0.0000000000007  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  43.16 
 
 
91 aa  73.9  0.0000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  47.87 
 
 
91 aa  73.9  0.0000000000007  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  45.26 
 
 
91 aa  73.9  0.0000000000008  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  44.68 
 
 
94 aa  73.6  0.0000000000009  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_008781  Pnap_2797  integration host factor, beta subunit  37.89 
 
 
104 aa  72.8  0.000000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.903901  hitchhiker  0.000129709 
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  46.32 
 
 
101 aa  73.6  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011883  Ddes_0087  histone family protein DNA-binding protein  46.32 
 
 
91 aa  73.2  0.000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3223  integration host factor, beta subunit  42.11 
 
 
102 aa  73.2  0.000000000001  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00795206  normal 
 
 
-
 
NC_009656  PSPA7_6125  putative DNA-binding protein  45.26 
 
 
90 aa  73.2  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3594  histone family protein DNA-binding protein  56.45 
 
 
92 aa  72.8  0.000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0799  histone-like DNA-binding protein  44.21 
 
 
90 aa  73.2  0.000000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0173855 
 
 
-
 
NC_002947  PP_5313  histone family protein DNA-binding protein  45.26 
 
 
99 aa  72.4  0.000000000002  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0463079 
 
 
-
 
NC_009076  BURPS1106A_0004  DNA-binding protein HU-alpha  43.16 
 
 
92 aa  72.8  0.000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4682  histone family protein DNA-binding protein  44.59 
 
 
92 aa  72  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0505442  normal 
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  44.68 
 
 
90 aa  72  0.000000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009074  BURPS668_0004  DNA-binding protein HU-alpha  43.16 
 
 
92 aa  72.8  0.000000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0021  integration host factor subunit beta  42.11 
 
 
103 aa  72  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.00013194 
 
 
-
 
NC_006348  BMA2913  DNA-binding protein HU, form B  43.16 
 
 
92 aa  72.8  0.000000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.5361  n/a   
 
 
-
 
NC_010551  BamMC406_0065  histone family protein DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2972  DNA-binding protein HU-alpha  43.16 
 
 
92 aa  72.8  0.000000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0066  histone family protein DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3247  histone-like DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia sp. 383  Bacteria  normal  normal  0.704477 
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  46.74 
 
 
91 aa  72  0.000000000002  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  45.26 
 
 
96 aa  72.4  0.000000000002  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_012560  Avin_48480  histone-like DNA-binding protein  44.21 
 
 
90 aa  72.4  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.707299  n/a   
 
 
-
 
NC_007651  BTH_I0004  DNA-binding protein HU-alpha  43.16 
 
 
126 aa  72.8  0.000000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_3067  histone family protein DNA-binding protein  46.67 
 
 
92 aa  72.8  0.000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0353619 
 
 
-
 
NC_010508  Bcenmc03_0084  histone family protein DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3933  histone family protein DNA-binding protein  45.33 
 
 
92 aa  72  0.000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3327  histone family protein DNA-binding protein  44.21 
 
 
94 aa  72  0.000000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.372094  normal  0.0697763 
 
 
-
 
NC_009512  Pput_5222  histone family protein DNA-binding protein  45.26 
 
 
99 aa  72.4  0.000000000002  Pseudomonas putida F1  Bacteria  normal  normal  0.60947 
 
 
-
 
NC_008060  Bcen_0005  histone-like DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.129264  n/a   
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  42.11 
 
 
91 aa  72.4  0.000000000002  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_009675  Anae109_4352  histone family protein DNA-binding protein  43.16 
 
 
123 aa  72.8  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.614172 
 
 
-
 
NC_011901  Tgr7_1544  integration host factor, beta subunit  41.84 
 
 
96 aa  72  0.000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.106384  n/a   
 
 
-
 
NC_008836  BMA10229_A1629  DNA-binding protein HU, form B  43.16 
 
 
92 aa  72.8  0.000000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0055  histone family protein DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  42.11 
 
 
90 aa  72.8  0.000000000002  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_008542  Bcen2424_0065  histone family protein DNA-binding protein  43.16 
 
 
92 aa  72.4  0.000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0092  integration host factor, alpha subunit  38.95 
 
 
96 aa  72.4  0.000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1118  HU family DNA-binding protein  52.7 
 
 
91 aa  72.8  0.000000000002  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000128568  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>