More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_5600 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_5600  nucleoid protein HU alpha subunit  100 
 
 
91 aa  184  3e-46  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.375895  normal 
 
 
-
 
NC_004578  PSPTO_5472  DNA-binding protein HU family  94.51 
 
 
111 aa  178  2e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5027  histone-like DNA-binding protein  93.41 
 
 
91 aa  176  7e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.705107 
 
 
-
 
NC_009439  Pmen_4401  nucleoid protein HU alpha subunit  94.44 
 
 
90 aa  174  3e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.177499 
 
 
-
 
NC_008463  PA14_70600  HU family DNA-binding protein  92.22 
 
 
90 aa  172  1.9999999999999998e-42  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6125  putative DNA-binding protein  91.11 
 
 
90 aa  170  6.999999999999999e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_48480  histone-like DNA-binding protein  87.78 
 
 
90 aa  167  7e-41  Azotobacter vinelandii DJ  Bacteria  normal  0.707299  n/a   
 
 
-
 
NC_010322  PputGB1_5361  histone family protein DNA-binding protein  86.67 
 
 
101 aa  155  1e-37  Pseudomonas putida GB-1  Bacteria  normal  normal  0.322215 
 
 
-
 
NC_002947  PP_5313  histone family protein DNA-binding protein  84.44 
 
 
99 aa  153  7e-37  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0463079 
 
 
-
 
NC_009512  Pput_5222  histone family protein DNA-binding protein  84.44 
 
 
99 aa  153  7e-37  Pseudomonas putida F1  Bacteria  normal  normal  0.60947 
 
 
-
 
NC_010501  PputW619_0160  histone family protein DNA-binding protein  84.44 
 
 
99 aa  153  9e-37  Pseudomonas putida W619  Bacteria  normal  0.982339  normal  0.332624 
 
 
-
 
NC_007963  Csal_3249  histone-like DNA-binding protein  66.29 
 
 
90 aa  126  9.000000000000001e-29  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  58.89 
 
 
90 aa  107  7.000000000000001e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  58.89 
 
 
90 aa  107  7.000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  60 
 
 
90 aa  106  1e-22  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_008740  Maqu_3758  histone family protein DNA-binding protein  57.3 
 
 
90 aa  106  1e-22  Marinobacter aquaeolei VT8  Bacteria  normal  0.639339  n/a   
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  57.78 
 
 
90 aa  105  2e-22  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  57.78 
 
 
90 aa  105  2e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  56.67 
 
 
90 aa  105  2e-22  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  57.78 
 
 
90 aa  105  2e-22  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  57.78 
 
 
90 aa  104  4e-22  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  55.56 
 
 
90 aa  102  2e-21  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  57.3 
 
 
90 aa  102  2e-21  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_007912  Sde_3836  nucleoid protein Hbs  55.06 
 
 
91 aa  102  2e-21  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00753337  normal 
 
 
-
 
NC_010577  XfasM23_0470  histone family protein DNA-binding protein  57.3 
 
 
94 aa  102  2e-21  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  56.67 
 
 
90 aa  102  2e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  53.33 
 
 
91 aa  101  3e-21  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  56.67 
 
 
101 aa  101  4e-21  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  56.67 
 
 
90 aa  101  4e-21  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_010513  Xfasm12_0532  histone-like protein  56.18 
 
 
94 aa  100  5e-21  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  53.33 
 
 
90 aa  100  6e-21  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  55.56 
 
 
90 aa  100  7e-21  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  55.56 
 
 
90 aa  100  7e-21  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  55.56 
 
 
90 aa  100  8e-21  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  55.56 
 
 
90 aa  99.8  1e-20  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  52.22 
 
 
91 aa  99.4  1e-20  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  53.33 
 
 
90 aa  99.4  2e-20  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  53.33 
 
 
90 aa  98.2  3e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1743  histone family protein DNA-binding protein  52.22 
 
 
106 aa  98.2  3e-20  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2857  histone family protein DNA-binding protein  54.44 
 
 
90 aa  98.2  3e-20  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000465869  n/a   
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  54.44 
 
 
90 aa  97.4  6e-20  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  54.44 
 
 
90 aa  97.4  6e-20  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_009484  Acry_0920  histone family protein DNA-binding protein  56.98 
 
 
87 aa  97.1  8e-20  Acidiphilium cryptum JF-5  Bacteria  normal  0.417728  n/a   
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  56.18 
 
 
90 aa  97.1  8e-20  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  51.11 
 
 
90 aa  96.3  1e-19  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  51.11 
 
 
98 aa  96.7  1e-19  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  55.56 
 
 
90 aa  96.7  1e-19  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  52.81 
 
 
96 aa  96.7  1e-19  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_009379  Pnuc_2026  histone family protein DNA-binding protein  51.11 
 
 
106 aa  95.9  2e-19  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.00000760647  n/a   
 
 
-
 
NC_012918  GM21_3008  histone family protein DNA-binding protein  54.44 
 
 
91 aa  95.5  2e-19  Geobacter sp. M21  Bacteria  n/a    normal  0.341575 
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  54.44 
 
 
91 aa  95.5  2e-19  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  53.33 
 
 
90 aa  95.5  2e-19  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  52.22 
 
 
90 aa  95.9  2e-19  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_010814  Glov_2215  histone family protein DNA-binding protein  56.32 
 
 
95 aa  95.5  2e-19  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000076232  n/a   
 
 
-
 
NC_011311  VSAL_p840_66  DNA-binding protein HU-alpha  51.65 
 
 
91 aa  94.7  3e-19  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0113448  n/a   
 
 
-
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  55.06 
 
 
90 aa  94.7  4e-19  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_012912  Dd1591_3864  transcriptional regulator HU subunit alpha  55.06 
 
 
90 aa  94.7  4e-19  Dickeya zeae Ech1591  Bacteria  normal  0.78216  n/a   
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  51.11 
 
 
90 aa  94.4  4e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  52.22 
 
 
90 aa  94.7  4e-19  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_011071  Smal_0839  histone family protein DNA-binding protein  56.67 
 
 
90 aa  94.7  4e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0237084  normal 
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  52.81 
 
 
90 aa  94.4  4e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  52.81 
 
 
90 aa  94.4  4e-19  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  51.11 
 
 
91 aa  94.7  4e-19  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  51.11 
 
 
91 aa  94.7  4e-19  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  51.11 
 
 
90 aa  94.4  5e-19  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_004578  PSPTO_3723  DNA-binding protein HU-beta  54.44 
 
 
90 aa  94  6e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.612497  n/a   
 
 
-
 
NC_007005  Psyr_1750  histone-like DNA-binding protein  54.44 
 
 
90 aa  94  6e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.519537  normal  0.0235988 
 
 
-
 
NC_007492  Pfl01_3694  nucleoid protein HU beta subunit  54.44 
 
 
90 aa  94  6e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.566059  normal 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  50 
 
 
90 aa  94  6e-19  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  51.11 
 
 
90 aa  94  6e-19  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  52.22 
 
 
90 aa  94  7e-19  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  50 
 
 
90 aa  94  7e-19  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  52.22 
 
 
90 aa  94  7e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  52.81 
 
 
91 aa  93.6  8e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_013421  Pecwa_0226  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  93.6  9e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0975648  n/a   
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  93.6  9e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  51.11 
 
 
91 aa  93.6  9e-19  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  51.11 
 
 
90 aa  93.6  9e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  52.81 
 
 
91 aa  92.8  1e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3994  histone family protein DNA-binding protein  53.93 
 
 
90 aa  92.8  1e-18  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_010658  SbBS512_E4491  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  92.8  1e-18  Shigella boydii CDC 3083-94  Bacteria  normal  0.0852675  n/a   
 
 
-
 
NC_010468  EcolC_4025  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  92.8  1e-18  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0158227 
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  93.2  1e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0045  histone family protein DNA-binding protein  52.22 
 
 
90 aa  92.8  1e-18  Sphingomonas wittichii RW1  Bacteria  decreased coverage  0.00000165888  normal 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009800  EcHS_A4234  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  92.8  1e-18  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  53.33 
 
 
90 aa  93.2  1e-18  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  53.93 
 
 
90 aa  93.2  1e-18  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010498  EcSMS35_4448  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  92.8  1e-18  Escherichia coli SMS-3-5  Bacteria  normal  0.302586  hitchhiker  0.00101008 
 
 
-
 
NC_012892  B21_03830  hypothetical protein  53.93 
 
 
90 aa  92.8  1e-18  Escherichia coli BL21  Bacteria  normal  0.485291  n/a   
 
 
-
 
NC_011353  ECH74115_5469  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  92.8  1e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.129609  normal 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  51.11 
 
 
90 aa  92.8  1e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  50 
 
 
93 aa  93.2  1e-18  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_009832  Spro_0290  transcriptional regulator HU subunit alpha  53.93 
 
 
90 aa  93.2  1e-18  Serratia proteamaculans 568  Bacteria  hitchhiker  0.0031706  hitchhiker  0.00995537 
 
 
-
 
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