More than 300 homologs were found in PanDaTox collection
for query gene Cphy_2465 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_2465  binding-protein-dependent transport systems inner membrane component  100 
 
 
324 aa  647    Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000591841  n/a   
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
316 aa  146  5e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  30.72 
 
 
316 aa  141  9.999999999999999e-33  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  30.48 
 
 
328 aa  138  1e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
316 aa  138  2e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  29.77 
 
 
338 aa  136  4e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
306 aa  136  6.0000000000000005e-31  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
328 aa  132  6.999999999999999e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  34.16 
 
 
300 aa  130  3e-29  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
311 aa  129  8.000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
322 aa  128  1.0000000000000001e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  32.99 
 
 
321 aa  128  1.0000000000000001e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
292 aa  128  1.0000000000000001e-28  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  30.07 
 
 
329 aa  128  1.0000000000000001e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  32.52 
 
 
311 aa  127  2.0000000000000002e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  29.61 
 
 
379 aa  127  3e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
299 aa  127  3e-28  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  27.73 
 
 
365 aa  126  5e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  28.95 
 
 
311 aa  123  3e-27  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
283 aa  123  4e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1530  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
295 aa  121  9.999999999999999e-27  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
346 aa  120  1.9999999999999998e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
322 aa  120  3e-26  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
299 aa  120  3e-26  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_009832  Spro_2846  binding-protein-dependent transport systems inner membrane component  34.94 
 
 
313 aa  120  3e-26  Serratia proteamaculans 568  Bacteria  normal  0.149421  normal  0.0970123 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
295 aa  120  3.9999999999999996e-26  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0392  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
328 aa  119  4.9999999999999996e-26  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
328 aa  119  6e-26  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
335 aa  119  6e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
299 aa  118  9.999999999999999e-26  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  29.68 
 
 
328 aa  118  1.9999999999999998e-25  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  31.12 
 
 
311 aa  118  1.9999999999999998e-25  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013174  Jden_1881  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
334 aa  117  1.9999999999999998e-25  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.804974 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
320 aa  118  1.9999999999999998e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  27.99 
 
 
331 aa  117  3e-25  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  34.15 
 
 
323 aa  115  7.999999999999999e-25  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_008528  OEOE_0254  ABC-type sugar transport system, permease component  30.43 
 
 
310 aa  115  1.0000000000000001e-24  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  27.36 
 
 
319 aa  115  1.0000000000000001e-24  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  28.15 
 
 
293 aa  115  1.0000000000000001e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3589  binding-protein-dependent transport systems inner membrane component  31.74 
 
 
294 aa  115  1.0000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00013616  n/a   
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  28.04 
 
 
305 aa  114  3e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_012669  Bcav_2718  binding-protein-dependent transport systems inner membrane component  28.48 
 
 
330 aa  114  3e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.21265 
 
 
-
 
NC_012669  Bcav_1516  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
315 aa  114  3e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0640497  normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
309 aa  113  4.0000000000000004e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  29.41 
 
 
310 aa  113  4.0000000000000004e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7172  sugar transport system (permease)  29.62 
 
 
323 aa  112  6e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0377247 
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  27.72 
 
 
293 aa  112  8.000000000000001e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  27.41 
 
 
354 aa  112  1.0000000000000001e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
328 aa  110  2.0000000000000002e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  27.69 
 
 
311 aa  110  3e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
279 aa  110  4.0000000000000004e-23  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
327 aa  110  4.0000000000000004e-23  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  29.47 
 
 
315 aa  109  7.000000000000001e-23  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  28.29 
 
 
310 aa  109  8.000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  28.81 
 
 
315 aa  108  9.000000000000001e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  25.49 
 
 
321 aa  108  1e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_008541  Arth_3323  binding-protein-dependent transport systems inner membrane component  28.03 
 
 
317 aa  108  1e-22  Arthrobacter sp. FB24  Bacteria  normal  0.0473972  n/a   
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  28.18 
 
 
320 aa  108  1e-22  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_008578  Acel_2048  binding-protein-dependent transport systems inner membrane component  27.84 
 
 
332 aa  108  1e-22  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4135  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
299 aa  108  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  30.82 
 
 
298 aa  108  1e-22  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  28.82 
 
 
314 aa  107  2e-22  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  26.71 
 
 
295 aa  107  2e-22  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  27.74 
 
 
316 aa  107  2e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
286 aa  107  3e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  29.37 
 
 
279 aa  107  3e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_013171  Apre_1667  binding-protein-dependent transport systems inner membrane component  29.68 
 
 
296 aa  107  4e-22  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.227806  n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  27.74 
 
 
305 aa  106  4e-22  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_012669  Bcav_3942  binding-protein-dependent transport systems inner membrane component  27.15 
 
 
322 aa  106  5e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.300337 
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  30.33 
 
 
302 aa  106  5e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
299 aa  106  6e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  27.72 
 
 
286 aa  106  6e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  31.5 
 
 
290 aa  105  8e-22  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  28.28 
 
 
296 aa  105  9e-22  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  28.03 
 
 
310 aa  105  9e-22  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_07470  carbohydrate ABC transporter membrane protein  29.57 
 
 
304 aa  105  1e-21  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  28.24 
 
 
320 aa  105  1e-21  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  26.93 
 
 
324 aa  105  1e-21  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013201  Hmuk_3223  binding-protein-dependent transport systems inner membrane component  29.27 
 
 
325 aa  105  1e-21  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.738302  normal 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  27.74 
 
 
334 aa  105  1e-21  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1775  binding-protein-dependent transport systems inner membrane component  27.6 
 
 
309 aa  105  1e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  0.114297  normal  0.0929805 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
353 aa  105  1e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_013171  Apre_0239  binding-protein-dependent transport systems inner membrane component  30.85 
 
 
288 aa  105  1e-21  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2080  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
308 aa  105  1e-21  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.136718  n/a   
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  29.47 
 
 
317 aa  105  1e-21  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  29.84 
 
 
314 aa  104  2e-21  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  29.84 
 
 
314 aa  104  2e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
303 aa  104  2e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
316 aa  105  2e-21  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  26.71 
 
 
322 aa  104  2e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  28.28 
 
 
296 aa  104  2e-21  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_012880  Dd703_0699  binding-protein-dependent transport systems inner membrane component  27.12 
 
 
291 aa  104  2e-21  Dickeya dadantii Ech703  Bacteria  normal  0.216687  n/a   
 
 
-
 
NC_011886  Achl_3123  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
317 aa  104  2e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.205507 
 
 
-
 
NC_013530  Xcel_0918  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
298 aa  104  2e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3242  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
317 aa  104  2e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008261  CPF_1114  sugar ABC transporter, permease protein  28.48 
 
 
301 aa  103  3e-21  Clostridium perfringens ATCC 13124  Bacteria  normal  0.212611  n/a   
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  26.76 
 
 
285 aa  103  3e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  28.12 
 
 
314 aa  103  3e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
356 aa  104  3e-21  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  29.37 
 
 
299 aa  103  3e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
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