More than 300 homologs were found in PanDaTox collection
for query gene Psyr_0071 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_0117  methyl-accepting chemotaxis protein  95.59 
 
 
658 aa  1268    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0071  histidine kinase, HAMP region: chemotaxis sensory transducer  100 
 
 
658 aa  1323    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5515  chemotaxis sensory transducer  78.27 
 
 
658 aa  1048    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.501051  normal  0.584272 
 
 
-
 
NC_010501  PputW619_0210  methyl-accepting chemotaxis sensory transducer  70.97 
 
 
632 aa  918    Pseudomonas putida W619  Bacteria  normal  0.248487  normal  0.150257 
 
 
-
 
NC_009052  Sbal_2976  methyl-accepting chemotaxis sensory transducer  31.95 
 
 
667 aa  296  1e-78  Shewanella baltica OS155  Bacteria  hitchhiker  0.000241408  n/a   
 
 
-
 
NC_009665  Shew185_2990  methyl-accepting chemotaxis sensory transducer  31.65 
 
 
667 aa  293  5e-78  Shewanella baltica OS185  Bacteria  normal  0.413203  n/a   
 
 
-
 
NC_009997  Sbal195_3134  methyl-accepting chemotaxis sensory transducer  31.8 
 
 
667 aa  293  6e-78  Shewanella baltica OS195  Bacteria  normal  0.0135223  normal  0.80442 
 
 
-
 
NC_011663  Sbal223_1387  methyl-accepting chemotaxis sensory transducer  31.65 
 
 
667 aa  293  6e-78  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1243  methyl-accepting chemotaxis sensory transducer  31.84 
 
 
667 aa  291  3e-77  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1146  methyl-accepting chemotaxis sensory transducer  32.12 
 
 
668 aa  290  5.0000000000000004e-77  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.970933  n/a   
 
 
-
 
NC_008322  Shewmr7_1313  methyl-accepting chemotaxis sensory transducer  31.89 
 
 
667 aa  290  6e-77  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00146838  normal 
 
 
-
 
NC_008577  Shewana3_1293  methyl-accepting chemotaxis sensory transducer  31.84 
 
 
667 aa  290  6e-77  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1385  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
683 aa  287  2.9999999999999996e-76  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2637  methyl-accepting chemotaxis sensory transducer  32.31 
 
 
667 aa  286  1.0000000000000001e-75  Shewanella putrefaciens CN-32  Bacteria  normal  0.0295827  n/a   
 
 
-
 
NC_008700  Sama_2345  putative methyl-accepting chemotaxis sensory transducer  31.47 
 
 
666 aa  285  2.0000000000000002e-75  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.60686 
 
 
-
 
NC_010506  Swoo_1568  methyl-accepting chemotaxis sensory transducer  31.71 
 
 
667 aa  283  5.000000000000001e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2939  methyl-accepting chemotaxis sensory transducer  31.52 
 
 
672 aa  278  2e-73  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0772  methyl-accepting chemotaxis sensory transducer  32.54 
 
 
646 aa  278  3e-73  Dickeya zeae Ech1591  Bacteria  hitchhiker  0.00540264  n/a   
 
 
-
 
NC_009831  Ssed_3114  methyl-accepting chemotaxis sensory transducer  30.18 
 
 
667 aa  275  2.0000000000000002e-72  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1310  methyl-accepting chemotaxis sensory transducer  30.79 
 
 
667 aa  273  7e-72  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1322  methyl-accepting chemotaxis sensory transducer  31.53 
 
 
667 aa  272  2e-71  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3282  methyl-accepting chemotaxis protein  29.87 
 
 
667 aa  268  2.9999999999999995e-70  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_0366  methyl-accepting chemotaxis sensory transducer  31.54 
 
 
643 aa  268  2.9999999999999995e-70  Enterobacter sp. 638  Bacteria  normal  normal  0.0151066 
 
 
-
 
NC_010676  Bphyt_6894  methyl-accepting chemotaxis sensory transducer  31.55 
 
 
657 aa  265  1e-69  Burkholderia phytofirmans PsJN  Bacteria  normal  0.068141  normal  0.373533 
 
 
-
 
NC_012880  Dd703_0792  methyl-accepting chemotaxis sensory transducer  30.78 
 
 
651 aa  263  8.999999999999999e-69  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4315  methyl-accepting chemotaxis sensory transducer  32.17 
 
 
656 aa  262  1e-68  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3594  methyl-accepting chemotaxis sensory transducer  31.11 
 
 
646 aa  261  4e-68  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3437  methyl-accepting chemotaxis sensory transducer  31.11 
 
 
646 aa  259  8e-68  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.143807  n/a   
 
 
-
 
NC_012856  Rpic12D_3066  methyl-accepting chemotaxis sensory transducer  30.66 
 
 
662 aa  259  1e-67  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002906  methyl-accepting chemotaxis protein  29.88 
 
 
678 aa  258  2e-67  Vibrio sp. Ex25  Bacteria  normal  0.816112  n/a   
 
 
-
 
NC_010682  Rpic_3412  methyl-accepting chemotaxis sensory transducer  30.37 
 
 
662 aa  256  7e-67  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4309  methyl-accepting chemotaxis sensory transducer  30.81 
 
 
659 aa  255  1.0000000000000001e-66  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.226298 
 
 
-
 
NC_007650  BTH_II1684  methyl-accepting chemotaxis protein I  32.62 
 
 
676 aa  254  4.0000000000000004e-66  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3136  putative methyl-accepting chemotaxis transmembrane protein  31.89 
 
 
661 aa  251  2e-65  Ralstonia solanacearum GMI1000  Bacteria  normal  0.598743  normal 
 
 
-
 
NC_009078  BURPS1106A_A0994  methyl-accepting chemotaxis protein  31.36 
 
 
678 aa  249  9e-65  Burkholderia pseudomallei 1106a  Bacteria  normal  0.799426  n/a   
 
 
-
 
NC_010552  BamMC406_4192  methyl-accepting chemotaxis sensory transducer  31.7 
 
 
660 aa  249  1e-64  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0520721  normal  0.510764 
 
 
-
 
NC_009075  BURPS668_A1080  methyl-accepting chemotaxis protein  30.74 
 
 
687 aa  248  3e-64  Burkholderia pseudomallei 668  Bacteria  normal  0.469209  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2308  methyl-accepting chemotaxis protein II  31.07 
 
 
684 aa  248  3e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3221  methyl-accepting chemotaxis sensory transducer  31.07 
 
 
660 aa  248  3e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.229974 
 
 
-
 
NC_008391  Bamb_3714  methyl-accepting chemotaxis sensory transducer  31.55 
 
 
660 aa  246  9e-64  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4070  methyl-accepting chemotaxis sensory transducer  31.97 
 
 
660 aa  246  9.999999999999999e-64  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4296  methyl-accepting chemotaxis sensory transducer  31.97 
 
 
660 aa  246  9.999999999999999e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_0631  chemotaxis sensory transducer  31.33 
 
 
656 aa  244  3.9999999999999997e-63  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.00821954  n/a   
 
 
-
 
NC_011891  A2cp1_0045  methyl-accepting chemotaxis sensory transducer  31.24 
 
 
651 aa  241  4e-62  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0030  methyl-accepting chemotaxis sensory transducer  31.68 
 
 
651 aa  238  2e-61  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0033  methyl-accepting chemotaxis sensory transducer  31.42 
 
 
651 aa  235  2.0000000000000002e-60  Anaeromyxobacter sp. K  Bacteria  normal  0.250878  n/a   
 
 
-
 
NC_012791  Vapar_4184  methyl-accepting chemotaxis sensory transducer  30.96 
 
 
680 aa  232  1e-59  Variovorax paradoxus S110  Bacteria  normal  0.12793  n/a   
 
 
-
 
NC_013173  Dbac_0026  methyl-accepting chemotaxis sensory transducer  30.91 
 
 
686 aa  231  2e-59  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3084  methyl-accepting chemotaxis sensory transducer  30.03 
 
 
719 aa  228  4e-58  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  41.76 
 
 
570 aa  227  7e-58  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_008835  BMA10229_0140  putative methyl-accepting chemotaxis protein  31.5 
 
 
684 aa  223  7e-57  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0610174  n/a   
 
 
-
 
NC_011138  MADE_01222  methyl-accepting chemotaxis protein  32.53 
 
 
580 aa  221  3.9999999999999997e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.566871  n/a   
 
 
-
 
NC_012918  GM21_3719  methyl-accepting chemotaxis sensory transducer  40.47 
 
 
540 aa  214  4.9999999999999996e-54  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3611  methyl-accepting chemotaxis sensory transducer  39.88 
 
 
540 aa  213  1e-53  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0837  histidine kinase, HAMP region: chemotaxis sensory transducer  28.93 
 
 
680 aa  212  2e-53  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0272085 
 
 
-
 
NC_002939  GSU2942  methyl-accepting chemotaxis protein  39.09 
 
 
544 aa  211  3e-53  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1039  protease htpx  29.14 
 
 
656 aa  211  3e-53  Campylobacter concisus 13826  Bacteria  normal  0.0758551  n/a   
 
 
-
 
NC_008609  Ppro_3147  methyl-accepting chemotaxis sensory transducer  40.18 
 
 
540 aa  209  1e-52  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0302394  n/a   
 
 
-
 
NC_007517  Gmet_2828  methyl-accepting chemotaxis sensory transducer  38.97 
 
 
550 aa  209  1e-52  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000014913 
 
 
-
 
NC_008782  Ajs_4123  methyl-accepting chemotaxis sensory transducer  30.14 
 
 
674 aa  209  2e-52  Acidovorax sp. JS42  Bacteria  normal  0.162807  normal  0.87643 
 
 
-
 
NC_012918  GM21_3345  methyl-accepting chemotaxis sensory transducer  42.36 
 
 
542 aa  207  4e-52  Geobacter sp. M21  Bacteria  n/a    normal  0.0226154 
 
 
-
 
NC_012918  GM21_0525  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.52 
 
 
632 aa  207  6e-52  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  37.7 
 
 
549 aa  207  6e-52  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3481  methyl-accepting chemotaxis sensory transducer  29.67 
 
 
674 aa  206  8e-52  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  36.11 
 
 
549 aa  206  1e-51  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_002939  GSU1374  methyl-accepting chemotaxis protein  41.21 
 
 
541 aa  206  1e-51  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0724  methyl-accepting chemotaxis sensory transducer  39.38 
 
 
539 aa  204  4e-51  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  37.06 
 
 
547 aa  203  9.999999999999999e-51  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_008609  Ppro_0142  methyl-accepting chemotaxis sensory transducer  39.01 
 
 
540 aa  202  1.9999999999999998e-50  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0808523  n/a   
 
 
-
 
NC_010814  Glov_2890  methyl-accepting chemotaxis sensory transducer  37.7 
 
 
549 aa  202  1.9999999999999998e-50  Geobacter lovleyi SZ  Bacteria  normal  0.824592  n/a   
 
 
-
 
NC_010814  Glov_2961  methyl-accepting chemotaxis sensory transducer  40.31 
 
 
542 aa  202  1.9999999999999998e-50  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0375  methyl-accepting chemotaxis sensory transducer  37.67 
 
 
674 aa  201  3e-50  Geobacter uraniireducens Rf4  Bacteria  normal  0.129925  n/a   
 
 
-
 
NC_010814  Glov_0889  methyl-accepting chemotaxis sensory transducer  38.97 
 
 
540 aa  201  3e-50  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1033  methyl-accepting chemotaxis protein  40.29 
 
 
533 aa  201  3.9999999999999996e-50  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3063  methyl-accepting chemotaxis sensory transducer  33.62 
 
 
533 aa  201  5e-50  Geobacter uraniireducens Rf4  Bacteria  normal  0.378908  n/a   
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  41.1 
 
 
661 aa  201  5e-50  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3964  methyl-accepting chemotaxis sensory transducer  40.43 
 
 
535 aa  200  7.999999999999999e-50  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000408371 
 
 
-
 
NC_008784  BMASAVP1_0507  methyl-accepting chemotaxis protein  30.32 
 
 
630 aa  199  1.0000000000000001e-49  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1221  methyl-accepting chemotaxis sensory transducer  38.53 
 
 
544 aa  198  2.0000000000000003e-49  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000143655  n/a   
 
 
-
 
NC_008609  Ppro_3107  methyl-accepting chemotaxis sensory transducer  39.47 
 
 
542 aa  198  2.0000000000000003e-49  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0529  methyl-accepting chemotaxis sensory transducer  38.74 
 
 
544 aa  198  2.0000000000000003e-49  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1988  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
674 aa  199  2.0000000000000003e-49  Thauera sp. MZ1T  Bacteria  normal  0.588025  n/a   
 
 
-
 
NC_008463  PA14_30820  putative methyl-accepting chemotaxis transducer  37.54 
 
 
535 aa  199  2.0000000000000003e-49  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0142633  hitchhiker  0.0000000000042709 
 
 
-
 
NC_011146  Gbem_3876  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
535 aa  197  4.0000000000000005e-49  Geobacter bemidjiensis Bem  Bacteria  normal  0.74566  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  37.68 
 
 
543 aa  197  4.0000000000000005e-49  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1383  methyl-accepting chemotaxis sensory transducer  31.4 
 
 
636 aa  197  7e-49  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00353653  normal  0.775857 
 
 
-
 
NC_010814  Glov_0149  methyl-accepting chemotaxis sensory transducer  39.66 
 
 
533 aa  197  7e-49  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1032  methyl-accepting chemotaxis protein  39.94 
 
 
645 aa  196  1e-48  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3282  methyl-accepting chemotaxis protein  32.44 
 
 
660 aa  196  1e-48  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_0921  methyl-accepting chemotaxis sensory transducer  25.36 
 
 
677 aa  196  1e-48  Marinomonas sp. MWYL1  Bacteria  normal  0.787316  normal 
 
 
-
 
NC_005945  BAS3056  methyl-accepting chemotaxis protein  32.44 
 
 
650 aa  194  3e-48  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0821  methyl-accepting chemotaxis sensory transducer  37.64 
 
 
545 aa  195  3e-48  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000877148  hitchhiker  0.00000558474 
 
 
-
 
NC_007530  GBAA_3291  methyl-accepting chemotaxis protein  32.44 
 
 
650 aa  194  3e-48  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.279097  n/a   
 
 
-
 
NC_002939  GSU0935  methyl-accepting chemotaxis protein, putative  34.88 
 
 
528 aa  194  4e-48  Geobacter sulfurreducens PCA  Bacteria  normal  0.220244  n/a   
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  31.96 
 
 
632 aa  194  4e-48  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  31.44 
 
 
632 aa  194  4e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  39.66 
 
 
549 aa  194  5e-48  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_012918  GM21_2326  methyl-accepting chemotaxis sensory transducer  34.05 
 
 
547 aa  194  5e-48  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B1699  methyl-accepting chemotaxis protein  31.51 
 
 
660 aa  193  7e-48  Bacillus cereus G9842  Bacteria  normal  0.606414  hitchhiker  0.000000000000351139 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  35.38 
 
 
630 aa  193  8e-48  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
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