| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3114 |
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| Symbol | |
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| ID | 5613892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3754341 |
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| End bp | 3756344 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934052 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001474846 |
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| Protein GI | 157376246 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTATA AAAACTGGCC AATTTCACAA CAGATAGGCA CATTAGCCCT GATATTAACC
GTTATTGTAT TTGGAGTTAT CGGCAGTATC TCATACCTTA CCGCAGCCGA TGTACTCGAA
GAGAAAGCCG TCACCGCCAT GCAGGCTCAG ATGCATGGCA CATCAGATCT GATTGAGGTG
CAATACGGTA GTCTATTGAC CCTTGCCCGT CGCAGCGCCG ATGTCCTGCG CGCCATGTAT
CCCGGCCAGT TCAGAAAGCC AAACAAAACA GTCAAAGTAT TAGGCAAGAT AACCCCCGCA
CTCGCCCATG AAAAAGAGCA GATCAACGCC TCGAAGAGTA AAGTTGATCG CTTCTCAAAT
CTCACCGGCG GTACAGCAAC CGTGTTTGTC CGAGAGGGCG ATGACTTCCT GCGTATCTCG
ACATCCTTGA AGAAAGCCGA TGGCAAACGT GCTCTGGGCA CTTATCTGGG TAAAAACCAC
CCGGGTTATG CCGCATTAAT GAGTGGTCAG GCTTATGAAG GTTACGCCAA GTTATTCGGC
AAAGACTACA TGACTGTATA TCGACCGATC ACTGATGTTC AGGGAGAAGT TATCGGTATC
CTCTATATCG GCTTCGATAT CACAGAATCG TTAACTCAGC TCCAGCAGGC GATGAATAAA
CTCAAGATTG AAGAAACCGG TTATTTCATG ATCATGCGAA AGAGTAATCA ATCTGTCGTT
GCCCACCCCA GTGTCAACTC GGGAGAACAG ATGACTCAGC AGATGCTCGG TGGCCTGTCG
ATTGAGCAAG CATTAACCAA TGATGGGTCC TGGGAATACA TCAACAATAA CAACGAACCT
ATGTACGCCT ATAGTGTCAA CATTCCCGGC TGGGATTGGG CACTGGTTGG CTTCGCTAAG
GTCAGCGAGC TTAATGAGGA GAGTCTTAAA TTACTCAGTA TCAATGTCTC TGTGGCCGCA
GTAGGGATTA TCTTAATCAC CTTAATGCTA TTCATTGTAC TAATGAAAAC ACTTCACCCA
TTAAAAGTGC TTCAACAGCA GCTGGATCAG CTTGGAAAAG GCGATCTCTC ACAAAGCTTC
AACAGACCCA ATACAAACAG CAAGAATGAA GTCGATATGA TCACCATCAG TACCTCTCAG
ATGGCCGATA GTTTAAGACA ATTGATTATG GCGCTGCAGC AATCGGTGAG CACCCTAGAG
ACCCAAGCCG CTGAAGCCCA GCAAACCGCA AGGCTTAATG GCGAAGAGGC GCAGTCATTG
ATGGCGCAGA CAGACCAGAT CGCCACGGCA ATCGAAGAGA TGTCGACCTC CATTCGTGAT
GTTGCCAGCC ATGCCAGTGA GGGAGCCAAC AAGAGCCAGC AGGTTGATAC CGCCTCACGC
CAAGGCCATG ACCAATTGAC TCAAGTCGTT AATGGCTTGG CAGAGCTCAG TCATCAACTC
AATAACAGTC ATGTCAGCGT CGAGAACGTG ACCAAAGAGA GTGAAGCGAT CAGTCAGGTC
ACTGAAGTGA TCAATGGGAT AGCCGAGCAG ACAAACCTGC TTGCCCTGAA TGCCGCAATT
GAAGCGGCGC GAGCGGGTGA ACAGGGGCGT GGATTTGCCG TCGTCGCCGA TGAGGTCAGA
ACGTTGGCAC AGCGAACTCA AACATCGATT CATGAGATTG GCCTGACCAT CACTCAACTG
CAGTCTCAGG TAAAGACCAC GGCGGAACAG ATGGGACAGA GCCATCAATT GGGTATTGCA
TCAGCCACTC AAGGGGAAGA AGCTGGCATT CAACTGAACC AGATCACCGA GAGTATCGGT
GAATTGGCCA TCTCATCGAG CAGTATCGCC AGTGCAACGG AGCAGCAAAG TGCCGTAGCC
GATGAGATAA CCCGTAACCT ACACCTGATA ACTGAGCTTG CCCGCGAAGG TGAACAGAGA
GCCGGTGAAA ATGTCGATGC AGCGCAGGGC TTATCGGATC TGGCCATAGA GCTAAAACAG
AAGATTAGCG TATTTAAAGC GTAA
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| Protein sequence | MNYKNWPISQ QIGTLALILT VIVFGVIGSI SYLTAADVLE EKAVTAMQAQ MHGTSDLIEV
QYGSLLTLAR RSADVLRAMY PGQFRKPNKT VKVLGKITPA LAHEKEQINA SKSKVDRFSN
LTGGTATVFV REGDDFLRIS TSLKKADGKR ALGTYLGKNH PGYAALMSGQ AYEGYAKLFG
KDYMTVYRPI TDVQGEVIGI LYIGFDITES LTQLQQAMNK LKIEETGYFM IMRKSNQSVV
AHPSVNSGEQ MTQQMLGGLS IEQALTNDGS WEYINNNNEP MYAYSVNIPG WDWALVGFAK
VSELNEESLK LLSINVSVAA VGIILITLML FIVLMKTLHP LKVLQQQLDQ LGKGDLSQSF
NRPNTNSKNE VDMITISTSQ MADSLRQLIM ALQQSVSTLE TQAAEAQQTA RLNGEEAQSL
MAQTDQIATA IEEMSTSIRD VASHASEGAN KSQQVDTASR QGHDQLTQVV NGLAELSHQL
NNSHVSVENV TKESEAISQV TEVINGIAEQ TNLLALNAAI EAARAGEQGR GFAVVADEVR
TLAQRTQTSI HEIGLTITQL QSQVKTTAEQ MGQSHQLGIA SATQGEEAGI QLNQITESIG
ELAISSSSIA SATEQQSAVA DEITRNLHLI TELAREGEQR AGENVDAAQG LSDLAIELKQ
KISVFKA
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