Gene Psyr_0071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_0071 
Symbol 
ID3365546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp72996 
End bp74972 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content62% 
IMG OID637650414 
Producthistidine kinase, HAMP region: chemotaxis sensory transducer 
Protein accessionYP_233183 
Protein GI66043342 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAGC CTCGTACCCG AATTGCTTCG CAACTTGGTA TTGCTCTGGC CGTGATCCTG 
GCGGTGGTTA TCAGTGGTAG TACCCTGTTC GCGTTGAGGT CTCTGGACGC GTCCAACCTG
GTCATTCGTG AAGAGCACAT GTCGAGTGAA GCCAGGCTCC TCGCTGACCA GCTCAACACT
TTCCACAGCA CGCTGCGCGA CAGCACTCAG CGCCTGAGTG GCCTGTTCGA AAAACGCTTC
GCCGCTGGCC TTAGCCTGCA AGCCGACAAG CCGGTCACGG TGGCGGGCAC ATCCACGCCA
GGCCTGTTCC TGCGTGATGC CGCGCTGAAC AACGACTTCA CCGAAGTCGA TGAATTCCGC
TCGATGACCG CCGGCGTCGC GACCATTTTC GTGCGCAGCG GCGACGACTT CATCCGTATC
AGCACCTCCC TGAGCAAGCA GGATGGCACG CGCGCCATCG GCACCGTGCT GGACCGCAAG
GGCGCAGCCT ACGAGCGTTT GATCGCCGGG CAGAGCTATG TCGGCAAAGC GGTATTGTTC
GATCGCTATT ACATGACCCA GTACAGCCCG GTCCGCGACA GCAGCGGCAA GATCATTGCG
GCGCTGTTCG TAGGGTTCGA TTACACCGAT GCGCAGAAGA CCCAGTTCGA TAACCTCAAG
AGCTTCCGCA TCGGCTCTAC CGGCTCGCTG GCGCTGCTCG ACGACAAGGG CACCTGGCTG
GTTCCACCGG CGGGCGTCAA ATCCCTGGAA GGTGCCGCCA AGTCCGTTGC CGAGCTTGCC
AGCAAACCAG GCAAGGCGCA GTTCTGGGAT GACGGGGATG ACAACTATTA CAGCGTCGGC
CAGCCGTTCG CCGGCGGCCC CTGGACCGTC ATCGCCAGCA TGCCGCGCAA GGAAATCAGC
GAAGTGACCT GGCACGTCGG CACGCAACTG GCGATCGGCA GTCTGCTGGC CATGCTCATC
GCCGTGATCA GCGCCATCTG GCTGCTGCGC AGCAAGCTGC GCCCATTGTC TGAACTGGTA
CGCCAGGCCG ACGCACTGGG TGCGGGCGAC CTGAGCGTAC GCCTGAATGT GACCAGCAAC
GACGAGATCG GGCAGCTGTC CGGCAGCTTC AACAAGATGA GCGAAGCACT GTCATCGATG
GTGTCGCATA TCCGTACCGC GGCGCAGGAA GTCAGCACCC GCGCCAACGT GCTGTCCGGC
CTGTCGGGCG GTGCGTTCGA GGGCATGGAA CAGCAATCCG GCGAGATCAC CAGCATGGCC
GGTGCCGTCG AAGAGTTCAG CGCCACGTCG ATGAACATCG CCGACAACAT GGGCAATACC
GAACGCCTGG CCCAGGAAAA TGCCCAGCAG ACACGCATCG GTCGCACCTC GATGGAAGAG
GCGTCTTCGT CGCTGCAACA GATCGCCACT TCGCTGAGCA GCACCGCCAA AGTCATCGAC
ACGCTGGGCC AGCGCTCGCA GGAAATCGGC AGCATCGTCG GGGTAATCAC CTCGATTGCC
GACCAGACCA ACCTGCTCGC GCTCAACGCT GCCATCGAGG CCGCGCGCGC CGGCGAACAA
GGTCGCGGCT TTGCCGTGGT GGCTGACGAA GTCCGCAGCC TGGCCTCGCG CACCCGTGAA
GCCACCGATG AGATTTCCGG CATGATCGCC AGCATCCAGC AGGAAACCGG CAACGCCATC
AGCACCATGC AGCAGGGCAA TACACTGATG CAGGAAGGCC TGTCGCTCAA CGCCAAAGTG
GCCTCCGCGC TGGCCCAGAT CGACGAGCAA AGTCGCTCGG CCGGTCACCA GTTCGCCGCC
ATCACCACCG CCACCCAGGA ACAAAGCAGC ACTGCGACCA TGCTCAGCAG CAACCTGCAA
AGCATCGCCA TGGCCAACAG TGAACAGCGC CAGGTCATGT CCAACCTGGC CATCACCGCC
CAGGAGCTGA ATGGCCTGGC GACAGAACTG CGTCACGAGG TTGACCGGTT CCGTTGA
 
Protein sequence
MSKPRTRIAS QLGIALAVIL AVVISGSTLF ALRSLDASNL VIREEHMSSE ARLLADQLNT 
FHSTLRDSTQ RLSGLFEKRF AAGLSLQADK PVTVAGTSTP GLFLRDAALN NDFTEVDEFR
SMTAGVATIF VRSGDDFIRI STSLSKQDGT RAIGTVLDRK GAAYERLIAG QSYVGKAVLF
DRYYMTQYSP VRDSSGKIIA ALFVGFDYTD AQKTQFDNLK SFRIGSTGSL ALLDDKGTWL
VPPAGVKSLE GAAKSVAELA SKPGKAQFWD DGDDNYYSVG QPFAGGPWTV IASMPRKEIS
EVTWHVGTQL AIGSLLAMLI AVISAIWLLR SKLRPLSELV RQADALGAGD LSVRLNVTSN
DEIGQLSGSF NKMSEALSSM VSHIRTAAQE VSTRANVLSG LSGGAFEGME QQSGEITSMA
GAVEEFSATS MNIADNMGNT ERLAQENAQQ TRIGRTSMEE ASSSLQQIAT SLSSTAKVID
TLGQRSQEIG SIVGVITSIA DQTNLLALNA AIEAARAGEQ GRGFAVVADE VRSLASRTRE
ATDEISGMIA SIQQETGNAI STMQQGNTLM QEGLSLNAKV ASALAQIDEQ SRSAGHQFAA
ITTATQEQSS TATMLSSNLQ SIAMANSEQR QVMSNLAITA QELNGLATEL RHEVDRFR