More than 300 homologs were found in PanDaTox collection
for query gene CPF_1111 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008261  CPF_1111  AraC family transcriptional regulator  100 
 
 		 506 aa  989    Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  29.15 
 
 		 546 aa  162  2e-38  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  29.34 
 
 		 532 aa  160  5e-38  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  28.65 
 
 		 507 aa  160  5e-38  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  28.84 
 
 		 507 aa  159  1e-37  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  26.94 
 
 		 539 aa  150  7e-35  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_1645  two component transcriptional regulator, AraC family  28.49 
 
 		 526 aa  149  1.0000000000000001e-34  Clostridium cellulolyticum H10  Bacteria  normal  0.168722  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  26.4 
 
 		 538 aa  144  5e-33  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_010001  Cphy_2007  two component AraC family transcriptional regulator  26.57 
 
 		 529 aa  137  6.0000000000000005e-31  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3282  two component AraC family transcriptional regulator  25.27 
 
 		 535 aa  134  3e-30  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2550  two component transcriptional regulator, AraC family  28.87 
 
 		 502 aa  134  3.9999999999999996e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  23.27 
 
 		 533 aa  134  5e-30  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  25.81 
 
 		 544 aa  132  2.0000000000000002e-29  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  23.46 
 
 		 508 aa  129  9.000000000000001e-29  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0579  two component AraC family transcriptional regulator  24.11 
 
 		 531 aa  129  9.000000000000001e-29  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_0314  two component transcriptional regulator, AraC family  26.89 
 
 		 494 aa  122  1.9999999999999998e-26  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0496  two component AraC family transcriptional regulator  24.64 
 
 		 543 aa  115  2.0000000000000002e-24  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  24.41 
 
 		 544 aa  112  1.0000000000000001e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_011898  Ccel_0147  two component transcriptional regulator, AraC family  24.5 
 
 		 525 aa  110  9.000000000000001e-23  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  43.31 
 
 		 365 aa  108  2e-22  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0618  two component AraC family transcriptional regulator  40.6 
 
 		 258 aa  108  3e-22  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00000605397  n/a   
 
 
-
 
NC_010001  Cphy_1394  two component AraC family transcriptional regulator  24.43 
 
 		 523 aa  106  1e-21  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_010001  Cphy_2141  two component AraC family transcriptional regulator  34.43 
 
 		 260 aa  100  4e-20  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  37.06 
 
 		 530 aa  97.4  5e-19  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  42.37 
 
 		 548 aa  97.4  6e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012034  Athe_2329  transcriptional regulator, AraC family  38.82 
 
 		 773 aa  97.1  8e-19  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_4591  two component transcriptional regulator, AraC family  34.09 
 
 		 265 aa  92.8  1e-17  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  35.16 
 
 		 252 aa  92.4  2e-17  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_2718  two component transcriptional regulator, AraC family  33.73 
 
 		 259 aa  91.7  3e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  37.84 
 
 		 291 aa  89.4  1e-16  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
NC_009012  Cthe_1584  two component AraC family transcriptional regulator  36 
 
 		 259 aa  89.7  1e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_2123  two component AraC family transcriptional regulator  32.26 
 
 		 414 aa  89.7  1e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.331776  n/a   
 
 
-
 
NC_010001  Cphy_3211  two component AraC family transcriptional regulator  33.7 
 
 		 548 aa  88.6  2e-16  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0042226  n/a   
 
 
-
 
NC_010001  Cphy_0771  two component AraC family transcriptional regulator  38.33 
 
 		 355 aa  89  2e-16  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000862622  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  34.42 
 
 		 462 aa  88.2  3e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.131918 
 
 
-
 
NC_008751  Dvul_2039  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 		 476 aa  88.2  3e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.238588  normal  1 
 
 
-
 
NC_010001  Cphy_3034  two component AraC family transcriptional regulator  35.33 
 
 		 556 aa  87.8  4e-16  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00618221  n/a   
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  28.88 
 
 		 343 aa  87.8  5e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_011898  Ccel_1428  transcriptional regulator, AraC family  34.58 
 
 		 285 aa  86.7  9e-16  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_008751  Dvul_2403  two component, sigma54 specific, Fis family transcriptional regulator  30.15 
 
 		 467 aa  86.7  9e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  1  normal  0.32958 
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  38.38 
 
 		 529 aa  85.9  0.000000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2253  two component AraC family transcriptional regulator  36.07 
 
 		 532 aa  86.3  0.000000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  40.16 
 
 		 253 aa  85.5  0.000000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_008262  CPR_0539  AraC family DNA-binding response regulator  38.78 
 
 		 529 aa  85.5  0.000000000000002  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  30.48 
 
 		 537 aa  85.1  0.000000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_2146  DNA-binding transcriptional regulator AraC  33.94 
 
 		 316 aa  85.1  0.000000000000003  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0876  transcriptional regulator, AraC family  40.82 
 
 		 405 aa  85.1  0.000000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  40.54 
 
 		 213 aa  84.7  0.000000000000003  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0995  two component transcriptional regulator, AraC family  40 
 
 		 542 aa  84.3  0.000000000000004  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_0149  two component transcriptional regulator, AraC family  40.83 
 
 		 525 aa  84.3  0.000000000000004  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  40.54 
 
 		 213 aa  84.3  0.000000000000005  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.000000185138 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  39.64 
 
 		 213 aa  84  0.000000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  30.17 
 
 		 214 aa  83.6  0.000000000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  hitchhiker  0.0084678 
 
 
-
 
NC_011769  DvMF_1360  two component, sigma54 specific, transcriptional regulator, Fis family  32.74 
 
 		 525 aa  82.8  0.00000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_011898  Ccel_1138  two component transcriptional regulator, AraC family  32.67 
 
 		 519 aa  82.8  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0864  two component AraC family transcriptional regulator  42.2 
 
 		 503 aa  83.2  0.00000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  37.5 
 
 		 513 aa  82  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_2195  multi-sensor signal transduction histidine kinase  29.29 
 
 		 502 aa  82.4  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.067402 
 
 
-
 
NC_008576  Mmc1_2943  response regulator receiver modulated diguanylate cyclase  34.25 
 
 		 438 aa  82  0.00000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.641955  normal  1 
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  36.59 
 
 		 515 aa  81.6  0.00000000000003  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_012917  PC1_2032  DNA-binding transcriptional regulator AraC  30.43 
 
 		 310 aa  80.9  0.00000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.527693  n/a   
 
 
-
 
NC_010814  Glov_3210  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  32.39 
 
 		 425 aa  81.3  0.00000000000004  Geobacter lovleyi SZ  Bacteria  normal  0.141244  n/a   
 
 
-
 
NC_011898  Ccel_1251  two component transcriptional regulator, AraC family  31.03 
 
 		 566 aa  81.3  0.00000000000004  Clostridium cellulolyticum H10  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_2332  DNA-binding transcriptional regulator AraC  30.43 
 
 		 310 aa  81.3  0.00000000000004  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0890796  n/a   
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  37.84 
 
 		 209 aa  80.9  0.00000000000005  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  37.84 
 
 		 209 aa  80.9  0.00000000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  37.84 
 
 		 209 aa  80.9  0.00000000000005  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  31.82 
 
 		 466 aa  80.9  0.00000000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  37.84 
 
 		 209 aa  80.9  0.00000000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_012880  Dd703_1909  DNA-binding transcriptional regulator AraC  31.19 
 
 		 314 aa  80.9  0.00000000000005  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  37.84 
 
 		 209 aa  80.9  0.00000000000005  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_008262  CPR_1003  DNA-binding response regulator  37.04 
 
 		 250 aa  80.9  0.00000000000005  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  35.64 
 
 		 513 aa  80.5  0.00000000000006  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.102838 
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  34.19 
 
 		 463 aa  80.5  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_2024  multi-sensor signal transduction histidine kinase  30.4 
 
 		 517 aa  80.5  0.00000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  35.71 
 
 		 224 aa  80.1  0.00000000000009  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal  1 
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  37.19 
 
 		 260 aa  80.1  0.00000000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal  1 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  37.84 
 
 		 211 aa  79.7  0.0000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_2248  DNA-binding transcriptional regulator AraC  31.48 
 
 		 305 aa  79.3  0.0000000000001  Serratia proteamaculans 568  Bacteria  normal  1  hitchhiker  0.0000211757 
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  37.84 
 
 		 209 aa  79.3  0.0000000000001  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_007517  Gmet_1219  response regulator receiver sensor signal transduction histidine kinase  35.2 
 
 		 396 aa  79.7  0.0000000000001  Geobacter metallireducens GS-15  Bacteria  normal  1  hitchhiker  0.0000364001 
 
 
-
 
NC_011769  DvMF_2107  response regulator receiver protein  31.9 
 
 		 768 aa  79.3  0.0000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  32.58 
 
 		 216 aa  79.7  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_009708  YpsIP31758_1882  DNA-binding transcriptional regulator AraC  31.48 
 
 		 310 aa  79  0.0000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  29.75 
 
 		 211 aa  79.3  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_012791  Vapar_3550  transcriptional regulator, AraC family  28.89 
 
 		 313 aa  78.6  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  0.682713  n/a   
 
 
-
 
NC_010159  YpAngola_A2264  DNA-binding transcriptional regulator AraC  31.48 
 
 		 310 aa  79  0.0000000000002  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004116  SAG1106  AraC family transcriptional regulator  31.37 
 
 		 309 aa  78.6  0.0000000000002  Streptococcus agalactiae 2603V/R  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3405  two component AraC family transcriptional regulator  36.72 
 
 		 253 aa  79  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  0.100445  n/a   
 
 
-
 
NC_011898  Ccel_2452  two component transcriptional regulator, AraC family  34.35 
 
 		 509 aa  78.6  0.0000000000002  Clostridium cellulolyticum H10  Bacteria  normal  0.0693402  n/a   
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  28.16 
 
 		 265 aa  79.3  0.0000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_010465  YPK_1996  DNA-binding transcriptional regulator AraC  31.48 
 
 		 310 aa  79  0.0000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_1172  AraC family DNA-binding response regulator  35.14 
 
 		 250 aa  79  0.0000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.409048  n/a   
 
 
-
 
NC_009487  SaurJH9_0207  response regulator receiver protein  29.46 
 
 		 252 aa  78.6  0.0000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  31.36 
 
 		 441 aa  78.2  0.0000000000003  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_010001  Cphy_3697  two component AraC family transcriptional regulator  35.25 
 
 		 517 aa  78.6  0.0000000000003  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000611836  n/a   
 
 
-
 
NC_009632  SaurJH1_0213  response regulator receiver  29.46 
 
 		 252 aa  78.6  0.0000000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_2641  AraC family transcriptional regulator  30.77 
 
 		 301 aa  78.2  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  31.36 
 
 		 441 aa  78.2  0.0000000000004  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  31.36 
 
 		 441 aa  77.8  0.0000000000004  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
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