87 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
PputW619_0076  CDS  NC_010501  83316  84935  1620  general substrate transporter  YP_001746951  hitchhiker  0.00192863  decreased coverage  1.46156e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0077  CDS  NC_010501  85113  85883  771  phospholipid/glycerol acyltransferase  YP_001746952  decreased coverage  1.91625e-07  decreased coverage  8.2307e-12  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0079  CDS  NC_010501  86475  88526  2052  glycyl-tRNA synthetase subunit beta  YP_001746954  normal  0.248487  decreased coverage  2.35888e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0080  CDS  NC_010501  88523  89470  948  glycyl-tRNA synthetase subunit alpha  YP_001746955  normal  0.352778  decreased coverage  8.95825e-12  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0183  CDS  NC_010501  187772  189169  1398  phosphomannomutase  YP_001747058  normal  0.12891  decreased coverage  4.47524e-08  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0184  CDS  NC_010501  189281  189736  456  deoxyuridine 5'-triphosphate nucleotidohydrolase  YP_001747059  normal  decreased coverage  2.52163e-08  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0185  CDS  NC_010501  189742  190953  1212  bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase  YP_001747060  normal  decreased coverage  4.33088e-08  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0212  CDS  NC_010501  220576  221466  891  LysR family transcriptional regulator  YP_001747087  decreased coverage  0.0028482  normal  0.250883  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0634  CDS  NC_010501  690840  691208  369  hypothetical protein  YP_001747508  decreased coverage  0.00145233  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0747  CDS  NC_010501  825263  826030  768  hemin importer ATP-binding subunit  YP_001747621  hitchhiker  0.000209221  decreased coverage  9.29505e-13  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0748  CDS  NC_010501  826043  826930  888  hypothetical protein  YP_001747622  hitchhiker  3.45483e-08  decreased coverage  1.09696e-12  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0749  CDS  NC_010501  827132  827410  279  TfoX domain-containing protein  YP_001747623  hitchhiker  2.82068e-09  decreased coverage  7.43098e-13  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0750  CDS  NC_010501  827588  829150  1563  hypothetical protein  YP_001747624  hitchhiker  0.000461346  decreased coverage  2.02029e-12  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_0759  CDS  NC_010501  838514  839128  615  putative sulfite oxidase subunit YedZ  YP_001747633  decreased coverage  5.6762e-09  hitchhiker  3.57829e-05  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1006  CDS  NC_010501  1104695  1105072  378  transcriptional regulator MvaT, P16 subunit  YP_001747880  decreased coverage  1.05934e-07  hitchhiker  4.027e-13  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1066  CDS  NC_010501  1170843  1172447  1605  L-aspartate oxidase  YP_001747940  decreased coverage  0.000905222  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1169  CDS  NC_010501  1289460  1290326  867  secretion protein HlyD family protein  YP_001748043  normal  0.595909  decreased coverage  0.00058772  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1173  CDS  NC_010501  1293391  1294287  897  formate/nitrate transporter  YP_001748047  decreased coverage  2.25808e-07  hitchhiker  0.0010745  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1185  CDS  NC_010501  1313630  1314910  1281  TRAP dicarboxylate transporter, DctM subunit  YP_001748059  decreased coverage  0.0078152  normal  0.144434  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1186  CDS  NC_010501  1314911  1315438  528  tripartite ATP-independent periplasmic transporter DctQ  YP_001748060  decreased coverage  0.00496459  normal  0.115693  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1194  CDS  NC_010501  1326617  1328224  1608  integral membrane sensor signal transduction histidine kinase  YP_001748068  decreased coverage  0.00846308  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1255  CDS  NC_010501  1388554  1390431  1878  phospholipid/glycerol acyltransferase  YP_001748129  normal  0.449657  decreased coverage  0.00341201  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1361  CDS  NC_010501  1483913  1484875  963  hypothetical protein  YP_001748235  decreased coverage  0.00507818  normal  0.397175  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1516  CDS  NC_010501  1671844  1675062  3219  ribonuclease  YP_001748390  decreased coverage  0.00855049  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1517  CDS  NC_010501  1675829  1676830  1002  RluA family pseudouridine synthase  YP_001748391  decreased coverage  1.47946e-05  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1603  CDS  NC_010501  1778397  1779392  996  Mg2 transporter protein CorA family protein  YP_001748477  normal  0.261111  decreased coverage  1.50807e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1604  CDS  NC_010501  1779505  1779768  264  hypothetical protein  YP_001748478  normal  0.0501197  decreased coverage  9.65437e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1605  CDS  NC_010501  1779771  1780595  825  TM helix repeat-containing protein  YP_001748479  hitchhiker  0.00681338  decreased coverage  1.54997e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1606  CDS  NC_010501  1780709  1781275  567  RNA polymerase sigma factor SigX  YP_001748480  hitchhiker  0.000172032  decreased coverage  1.26876e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1607  CDS  NC_010501  1781386  1782423  1038  OmpF family protein  YP_001748481  decreased coverage  2.81488e-06  decreased coverage  1.76342e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1608  CDS  NC_010501  1782522  1783262  741  uroporphyrin-III C-methyltransferase  YP_001748482  hitchhiker  0.000713921  decreased coverage  1.48067e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1609  CDS  NC_010501  1783290  1784957  1668  protein serine/threonine phosphatase  YP_001748483  normal  0.122256  decreased coverage  2.29317e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1777  CDS  NC_010501  1974692  1977280  2589  aconitate hydratase  YP_001748650  decreased coverage  0.00224724  hitchhiker  0.000953384  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1849  CDS  NC_010501  2067708  2068817  1110  agmatine deiminase  YP_001748721  normal  0.552976  decreased coverage  0.00228426  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1850  CDS  NC_010501  2068817  2069917  1101  extracellular solute-binding protein  YP_001748722  normal  0.954804  decreased coverage  0.00256216  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1851  CDS  NC_010501  2069968  2070966  999  alpha/beta hydrolase fold  YP_001748723  normal  decreased coverage  0.00240679  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1858  CDS  NC_010501  2077161  2077523  363  hypothetical protein  YP_001748730  decreased coverage  0.00367934  normal  0.013148  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1949  CDS  NC_010501  2178966  2180249  1284  FAD dependent oxidoreductase  YP_001748821  normal  0.764265  decreased coverage  0.00013363  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1964  CDS  NC_010501  2192403  2192723  321  hypothetical protein  YP_001748836  decreased coverage  2.40343e-05  normal  0.0241485  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1965  CDS  NC_010501  2192900  2193112  213  cold-shock DNA-binding domain-containing protein  YP_001748837  decreased coverage  2.0659e-05  normal  0.0130883  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_1966  CDS  NC_010501  2193272  2193574  303  hypothetical protein  YP_001748838  decreased coverage  3.01567e-05  normal  0.0233516  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2049  CDS  NC_010501  2280621  2282504  1884  feruloyl-CoA synthase  YP_001748918  decreased coverage  0.0087834  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2119  CDS  NC_010501  2353178  2354065  888  allophanate hydrolase subunit 1  YP_001748988  decreased coverage  0.00766127  normal  0.384729  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2120  CDS  NC_010501  2354062  2355033  972  urea amidolyase related protein  YP_001748989  decreased coverage  0.00861242  normal  0.545781  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2277  CDS  NC_010501  2535693  2537855  2163  hypothetical protein  YP_001749146  decreased coverage  4.53679e-06  hitchhiker  4.45422e-05  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2280  CDS  NC_010501  2541063  2545274  4212  AAA ATPase  YP_001749149  hitchhiker  0.00184905  decreased coverage  4.93751e-06  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2419  CDS  NC_010501  2687636  2688181  546  HupE/UreJ protein  YP_001749288  decreased coverage  0.00415524  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2638  CDS  NC_010501  2922967  2924199  1233  outer membrane porin  YP_001749499  decreased coverage  0.00757787  normal  0.107992  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2643  CDS  NC_010501  2928653  2929204  552  peptidase S14 ClpP  YP_001749504  decreased coverage  0.00556113  normal  0.503778  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2644  CDS  NC_010501  2929406  2930323  918  hypothetical protein  YP_001749505  decreased coverage  0.0027235  normal  0.411348  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2959  CDS  NC_010501  3287770  3288447  678  hypothetical protein  YP_001749820  decreased coverage  0.00977193  normal  0.494101  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2987  CDS  NC_010501  3325329  3326744  1416  hypothetical protein  YP_001749848  decreased coverage  1.1145e-05  hitchhiker  0.00753945  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_2988  CDS  NC_010501  3326741  3327682  942  extracellular solute-binding protein  YP_001749849  decreased coverage  2.13748e-07  normal  0.0196481  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3601  CDS  NC_010501  4008213  4009097  885  cell division protein ZipA  YP_001750452  decreased coverage  0.00102901  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3613  CDS  NC_010501  4025049  4025564  516  hypothetical protein  YP_001750464  decreased coverage  0.00378889  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3665  CDS  NC_010501  4080130  4080918  789  chemotaxis phosphatase, CheZ  YP_001750516  decreased coverage  0.00761761  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3675  CDS  NC_010501  4091614  4092492  879  hypothetical protein  YP_001750526  decreased coverage  0.00300722  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3760  CDS  NC_010501  4178073  4179515  1443  magnesium transporter  YP_001750611  decreased coverage  0.00964036  normal  0.880674  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3792  CDS  NC_010501  4216817  4217494  678  two component transcriptional regulator  YP_001750643  normal  decreased coverage  2.77452e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3793  CDS  NC_010501  4217664  4218080  417  hypothetical protein  YP_001750644  normal  decreased coverage  1.94694e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3794  CDS  NC_010501  4218139  4219479  1341  integral membrane sensor signal transduction histidine kinase  YP_001750645  normal  decreased coverage  3.35712e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3795  CDS  NC_010501  4219611  4220168  558  nitroreductase  YP_001750646  normal  decreased coverage  1.77685e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3796  CDS  NC_010501  4220350  4221804  1455  TrkH family potassium uptake protein  YP_001750647  normal  decreased coverage  2.85199e-10  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3824  CDS  NC_010501  4256612  4257415  804  LuxR family transcriptional regulator  YP_001750675  decreased coverage  0.00247699  normal  0.327982  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3825    NC_010501  4257501  4258625  1125      decreased coverage  0.00107151  normal  0.37343  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_3945  CDS  NC_010501  4374527  4375741  1215  HK97 family phage portal protein  YP_001750794  decreased coverage  0.00231416  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4047  CDS  NC_010501  4467651  4468148  498  phage protein  YP_001750896  decreased coverage  1.48405e-05  hitchhiker  6.8714e-13  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4328  CDS  NC_010501  4774465  4775610  1146  radical SAM protein  YP_001751177  normal  decreased coverage  2.14748e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4329  CDS  NC_010501  4775639  4776064  426  nucleoside diphosphate kinase  YP_001751178  normal  decreased coverage  1.43413e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4330  CDS  NC_010501  4776154  4776354  201  FeS assembly protein IscX  YP_001751179  normal  decreased coverage  1.22179e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4331  CDS  NC_010501  4776365  4776706  342  ferredoxin, 2Fe-2S type, ISC system  YP_001751180  normal  0.850954  decreased coverage  1.32969e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4332  CDS  NC_010501  4776710  4778572  1863  chaperone protein HscA  YP_001751181  normal  decreased coverage  3.66602e-11  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4578  CDS  NC_010501  5053184  5055583  2400  heavy metal translocating P-type ATPase  YP_001751427  normal  0.530867  decreased coverage  0.00687508  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4579  CDS  NC_010501  5055580  5055984  405  MerR family transcriptional regulator  YP_001751428  normal  0.923905  decreased coverage  0.00324593  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4656  CDS  NC_010501  5141511  5142386  876  ABC transporter related  YP_001751505  hitchhiker  0.000169542  decreased coverage  0.0012256  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4657  CDS  NC_010501  5142383  5143684  1302  inner-membrane translocator  YP_001751506  normal  0.123215  decreased coverage  0.00142103  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4732  CDS  NC_010501  5221783  5222283  501  30S ribosomal protein S5  YP_001751577  decreased coverage  0.000128716  normal  0.628759  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4751  CDS  NC_010501  5230534  5231727  1194  elongation factor Tu  YP_001751596  decreased coverage  0.000118941  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4762  CDS  NC_010501  5246577  5246945  369  preprotein translocase subunit SecE  YP_001751607  decreased coverage  2.22793e-07  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4763  CDS  NC_010501  5247120  5248313  1194  elongation factor Tu  YP_001751608  decreased coverage  5.00279e-06  normal  0.983008  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4768  CDS  NC_010501  5258107  5259525  1419  peptidase M23B  YP_001751613  decreased coverage  2.82967e-07  normal  0.90661  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4894  CDS  NC_010501  5405910  5406680  771  electron transfer flavoprotein alpha/beta-subunit  YP_001751739  decreased coverage  1.24333e-08  normal  0.576947  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4937  CDS  NC_010501  5452249  5454717  2469  hypothetical protein  YP_001751782  hitchhiker  9.92532e-07  decreased coverage  1.06484e-08  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_4975  CDS  NC_010501  5493329  5494294  966  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  YP_001751820  decreased coverage  0.000230006  hitchhiker  0.00807974  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_5092  CDS  NC_010501  5649576  5649737  162  hypothetical protein  YP_001751937  decreased coverage  0.00404445  normal  0.354219  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_5093  CDS  NC_010501  5649795  5650079  285  hypothetical protein  YP_001751938  decreased coverage  0.00593524  normal  0.275376  Pseudomonas putida W619  Bacteria 
 
 
-
 
PputW619_R0083  tRNA  NC_010501  5246990  5247065  76  tRNA-Trp    decreased coverage  7.61194e-08  normal  Pseudomonas putida W619  Bacteria 
 
 
-
 
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