| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2643 |
|---|
| Symbol | |
|---|
| ID | 6111594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 2928653 |
|---|
| End bp | 2929204 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641622430 |
|---|
| Product | peptidase S14 ClpP |
|---|
| Protein accession | YP_001749504 |
|---|
| Protein GI | 170721816 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00556113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.503778 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGAC ACATCATTCA CTTCACCGGC CCGATCAACT CATCCACCTG CGGCAACCTG
ATCAGTACCT GCTCCAAGGT GATGCAACAG GGGGCCGATC TACTTCAGTT GAATATCGCC
ACGATGGGCG GCGAATGCAG TTATGGGTTT ACCTTGTACA ACTTTCTGCG CGCCTTGCCT
GTACCCGTGC ACACGCACAA CCTTGGCACA GTCGAATCGA TGGGCAACAT CCTGTTTCTG
GCGGGTGAGC ACCGTACCGC CTGCGCCATG AGCAAGTTCC TGTTTCACCC GTTTCACTGG
ACGCTGCATG GCGCGGTCGA CCACGCGCGT ATGGCCGAGT ATGCGATGAG TCTTGATTAT
GATTTGCGGC TGTATGCCCA GATCGTTGCC GAAAGAACCG CTGGCAGCGC CGAAGTATTG
GATGTGCAGC GCTACCTGAT GGCTGACCCG CGAATACTGG ATCCTCAGGA GGCACTGGGG
AGCGGCCTGA TCCATGCCGT CGATGAAATG CCGATCGAGG CACAAGTCAC ACAGTGGAGT
GTGCATGCGT AA
|
|---|
| Protein sequence | MARHIIHFTG PINSSTCGNL ISTCSKVMQQ GADLLQLNIA TMGGECSYGF TLYNFLRALP
VPVHTHNLGT VESMGNILFL AGEHRTACAM SKFLFHPFHW TLHGAVDHAR MAEYAMSLDY
DLRLYAQIVA ERTAGSAEVL DVQRYLMADP RILDPQEALG SGLIHAVDEM PIEAQVTQWS
VHA
|
|---|
| |