| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1516 |
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| Symbol | |
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| ID | 6110450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1671844 |
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| End bp | 1675062 |
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| Gene Length | 3219 bp |
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| Protein Length | 1072 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641621296 |
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| Product | ribonuclease |
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| Protein accession | YP_001748390 |
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| Protein GI | 170720702 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00855049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA TGCTGATTAA CGCAACTCAA CCCGAAGAGT TGCGTGTAGC CCTGGTGGAC
GGCCAACGCC TGTACGACCT GGACATCGAG TCCGGTGCGC GCGAGCAGAA AAAGGCCAAC
ATCTACAAAG GCAAGATCAC CCGGATCGAG CCCAGCCTCG AAGCCGCCTT CGTCGACTTC
GGCTCCGAAC GTCACGGCTT CCTGCCGCTG AAGGAAATCT CCCGCGAGTA CTTCAAGAAA
GCCCCTGAAG GCCGCGTCAA CATCAAGGAC GTCCTGAGCG AAGGCCAGGA AGTCATCGTC
CAGGTCGAGA AGGAAGAGCG TGGCAACAAA GGCGCCGCCC TGACCACCTT CATCAGCCTG
GCAGGCCGCT ACCTGGTGCT GATGCCCAAC AACCCCCGCG CTGGCGGCAT CTCCCGCCGC
ATCGAAGGCG AAGAGCGCAA CGAACTGCGT GAAGCCCTCA ACGGCCTGAC CGTGCCAGGC
GACATGGGCC TGATCGTGCG CACCGCAGGC CTTGGCCGCA GCAGCGAAGA AATGCAGTGG
GACCTCGATT ACCTGCTGCA ACTGTGGACC GCCATCAAGG AAGCATCGCT GGATCGCGCT
GCGCCGTTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG
CGCCAGGACA TCGGCGAAGT GCTGATCGAC AGCATCGATG CCCAGGAAGA AGCACTGACC
TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTCA AGCTGTACGA AGACAGCGTA
CCGCTGTTCA ACCGCTTCCA GATCGAAAGC CAGATCGAGA CCGCCTTCCA GCGCGTCGTC
GACCTGCCGT CGGGCGGCTC TATCGTGATC GACCCGACCG AGGCCCTGGT TTCCATCGAC
ATCAACTCGG CGCGCGCCAC CAAGGGCAGC GACATCGAGG AAACCGCCCT GCAGACCAAC
CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTGCGCCTGC GTGACATCGG CGGCCTGATC
GTCATCGACT TCATCGACAT GACGCCGGCG AAAAACCAGC GCGCCGTCGA AGAACGGGTA
CGCGAAGCCC TCGAGGCCGA CCGCGCCCGC GTACAGGTCG GCCGCATCTC GCGCTTCGGC
CTGCTGGAAA TGTCCCGTCA GCGCCTGCGC CCGTCGCTGG GCGAAAGCAG CGGCATCGTC
TGCCCGCGCT GCTCCGGCAC CGGCATCATC CGTGATGTCG AGTCGCTGTC CCTGGCCATC
CTGCGCCTGA TCGAAGAAGA AGCCCTGAAG GACCGTACTG CCGAAGTACG CGCCCAGGTA
CCGATTCCGG TGGCCGCCTT CCTGCTCAAC GAGAAGCGCA ACTCGATCAC CAAGATCGAA
CTGCGCACCC GTGCCCGCAT CATCATTCTG CCGAACGACC ACCTGGAAAC CCCGCACTTC
GAAGTCCAGC GCCTGCGCGA CGACAACCCG GAAGTGCTGA ACAACCAGTC CAGCTACGAA
ATCGCCGCCA CCGAAACCGA AGAAGCGCCG CAGCCGACCG CCACGCGCAC CCTGGTGCGC
CAGGAAGCAG CGGTCAAGAC TGCACCGGCC CGCGCCAACG CTCCGGTACC GAGCGCTGTC
GAAGAACAGC AGCCTGCCGC ACCGGCAGCC CCGGCACCTA GCGTTCCGGA GCCAAGCCTG
TTCAAAGGCC TGGTGAAGTC GCTGGTCAGC CTGTTCGCCG GCAAGGAAGA GCCTGCCGCC
GCCCCGGTGG TCACCGCCGA GAAGCCTGCC ACCGAGCGCA CTCAGCGTAA CGAGGAGCGT
CGCAACGGCC GCCAGCAGAG CCGCAACCGC AACGGCCGCC GTGACGAAGA GCGCAAACCT
CGTGAAGAGC GTGCCGAGCG CACCCCGCGC GAAGAGCGCC AGCCGCGTGA AGAGCGCGCA
CCTCGTGAAG AACGTGCACC TCGTGAAGAG CGCGCCCCTC GCCAGCCACG CGAAGACCGC
CGCGGCAACC GCGAAGAGCG CGTCCGCGAA CTGCGCGAGC CTCTGGATGC AGCACCGGCC
GCTCGCGAAG AGCGCCAGCC ACGTGAAGAG CGTGCACCTC GCGAAGAACG TGCTCCACGT
GAAGAACGCG CACCTCGCGA AGAACGTGCT CCACGTGAAG AGCGCGCGCC TCGCGAAGAA
CGTGCTCCAC GTGAAGAGCG TGCGCCTCGT GAAGAACGCG CTCCACGTGA AGAGCGTGCA
CCTCGTGAAG AACGCGCACC GCGTGAAGAA CGTCAGCCAC GCCCTCCACG CGAAGAGCGC
CAGCCACGTG AAGCTGAGCA GGCTGCAGAG CTCGCCGATG AGCAACTGCC GAACGAGGAG
CTGCAACAGG ACGAGCAGGA AGGTTCCGAT GACGAGCGTC CGCGCCGCCG CTCTCGCGGC
CAGCGTCGCC GCAGCAACCG TCGTGAGCGC CAGCGCAACG CCAATGGCGA GCTGATCGAA
GGCAGCGACG AAGAAGGCAG CGACGAGCAA CCGCAACAGC ACCAGGCCAC CGAGCTGGGT
GCCGAACTGG CTGCCGGCCT GGCTGTCACC GCGGCTGTCG CCAGCAGCAA CATAAGTGCT
GGCGCCGAAG CGCAAGCCAA CCAGCAGGCT GAACGCGCCA GCGCCGAAGC CGCCACCACC
GACAACAGCG AAGTCGCTCA GCCGGCCGAG CAGGTCGAAG CCGTCGCCAA GGCCGAGGAA
ATCGCCATTG CACCGGTGGT CGAGCAGCCG CTCAGCGAGC CGGTCGCTGC GATCGAAGCC
GGTGCCGAGC CTGTGGTTGA AGTTGCGCCT GAGCCGGTAG TCGAACAAGC CCCTGCGGTC
GAGCCGGTAG TGGTTGCCGA GGCGCCTGTA GAGGCACCTG TCGAAGCGCC GGCCATCGAA
GCAGGTGAAG TAGAGAAAGC CCAGGTCGCC GCTGAACAAG CGCCGGCTGC CGAGCTGCCT
GCGGCTGTCG TTGAAACCCA GCCAGAAGTG GCTGCCGAGC CTGCAGCAAC CGTAGTTGCA
GCAGCGCCAG TGGTCGCCGA GCCTGCCCCG GTAGAAGCAC CGGCAGCGGT CGAAGCCGCC
ACCGTCATGC TGCCTAACGG TCGCGCCCCT AACGACCCAC GTGAAGTGCG TCGTCGCAAG
CGTGAGGCCG AAGCGGCTGC CAAGGCTGCG CAGGAAGCGG CCGCTGCTGG CGCGCCAACG
GTGGAGACCG CTGATGAGCA AAAGCCTCAT CACGGTTGA
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| Protein sequence | MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGKITRIE PSLEAAFVDF
GSERHGFLPL KEISREYFKK APEGRVNIKD VLSEGQEVIV QVEKEERGNK GAALTTFISL
AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLTVPG DMGLIVRTAG LGRSSEEMQW
DLDYLLQLWT AIKEASLDRA APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALT
FIRQVMPQYA SKVKLYEDSV PLFNRFQIES QIETAFQRVV DLPSGGSIVI DPTEALVSID
INSARATKGS DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV
REALEADRAR VQVGRISRFG LLEMSRQRLR PSLGESSGIV CPRCSGTGII RDVESLSLAI
LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRARIIIL PNDHLETPHF
EVQRLRDDNP EVLNNQSSYE IAATETEEAP QPTATRTLVR QEAAVKTAPA RANAPVPSAV
EEQQPAAPAA PAPSVPEPSL FKGLVKSLVS LFAGKEEPAA APVVTAEKPA TERTQRNEER
RNGRQQSRNR NGRRDEERKP REERAERTPR EERQPREERA PREERAPREE RAPRQPREDR
RGNREERVRE LREPLDAAPA AREERQPREE RAPREERAPR EERAPREERA PREERAPREE
RAPREERAPR EERAPREERA PREERAPREE RQPRPPREER QPREAEQAAE LADEQLPNEE
LQQDEQEGSD DERPRRRSRG QRRRSNRRER QRNANGELIE GSDEEGSDEQ PQQHQATELG
AELAAGLAVT AAVASSNISA GAEAQANQQA ERASAEAATT DNSEVAQPAE QVEAVAKAEE
IAIAPVVEQP LSEPVAAIEA GAEPVVEVAP EPVVEQAPAV EPVVVAEAPV EAPVEAPAIE
AGEVEKAQVA AEQAPAAELP AAVVETQPEV AAEPAATVVA AAPVVAEPAP VEAPAAVEAA
TVMLPNGRAP NDPREVRRRK REAEAAAKAA QEAAAAGAPT VETADEQKPH HG
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