| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4656 |
|---|
| Symbol | |
|---|
| ID | 6113637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5141511 |
|---|
| End bp | 5142386 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641624462 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001751505 |
|---|
| Protein GI | 170723817 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000169542 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0012256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AAATCATTCT CTCGGTCGAT AACCTGATGA TGCAGTTCGG TGGCATCAAG
GCGCTCAGCG ACGTCAGCCT CAAGGTCAAG CGTAACCAGA TCTTCGCCCT GATCGGCCCC
AACGGCGCTG GCAAGACCAC GGTGTTCAAC TGCCTGACCG GTTTCTACAA GGCCAGCGGC
GGGCGCATCG AGCTGAACGT GCGCGGTAGC CATACCAACG TCATCCAGTT GCTTGGTGAG
CGCTTCCAGG CGGCGGACTT CGTTTCGCCG GCACGTTTTG GTTCGCGCCT GTACTACAAG
ATGTTCGGTG GCACCCACCT GGTCAACCGC GCCGGGCTGG CGCGCACCTT CCAGAACATT
CGCCTGTTCA AGGAAATGTC GGTGGTGGAA AACCTGCTGG TAGCCCAGCA CATGTGGGTC
AACCGCAACC TGCTGGCCGG CGTGCTCAAC ACCAAGGCGT ACCGCAAGGC CGAGAGCGAT
GCCCTGGACC ACGCATTCTA CTGGCTGGAG GTGGTCGATC TGGTCGACTG TGCCAACCGC
TTGGCCGGGG AGCTTTCGTA TGGCCAGCAG CGCCGCCTGG AAATCGCCCG GGCCATGTGC
ACGCGGCCGA AGATCATCTG CCTCGACGAA CCGGCGGCCG GCCTCAACCC GCAGGAGACC
GAAGCACTTA GCCGTATGAT CCGCGTGCTG CGTGACGAGC ACGACATCAC CGTGGTGCTG
ATCGAACACG ATATGGGCAT GGTCATGAGC ATTTCCGACC ATATCGTCGT GCTCGACCAC
GGCAACGTCA TCGCCGAAGG CGCGCCGCAG GATATCCGCC ATAACCCGAC GGTGATAGCC
GCCTACCTGG GTGCCGACGA AGAGGAGCTG GTATGA
|
|---|
| Protein sequence | MSDEIILSVD NLMMQFGGIK ALSDVSLKVK RNQIFALIGP NGAGKTTVFN CLTGFYKASG
GRIELNVRGS HTNVIQLLGE RFQAADFVSP ARFGSRLYYK MFGGTHLVNR AGLARTFQNI
RLFKEMSVVE NLLVAQHMWV NRNLLAGVLN TKAYRKAESD ALDHAFYWLE VVDLVDCANR
LAGELSYGQQ RRLEIARAMC TRPKIICLDE PAAGLNPQET EALSRMIRVL RDEHDITVVL
IEHDMGMVMS ISDHIVVLDH GNVIAEGAPQ DIRHNPTVIA AYLGADEEEL V
|
|---|
| |