Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_2638 |
Symbol | |
ID | 6111589 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 2922967 |
End bp | 2924199 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641622425 |
Product | outer membrane porin |
Protein accession | YP_001749499 |
Protein GI | 170721811 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00757787 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.107992 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCA CTCGCTTCTC TTGCCTCACC TGGCTTGCCA CGCTCGCCCT GCCCTTGCCG GCCTTGGCGG ACTTCGTCGG CGACAGCCAT GCGCGCCTGG AACTGCGCAA CCACTACCTC AACCGCGACT TCCGCCAGAG CAATGCGCCG CAGGCCAAGG CCGAGGAATG GGGCCAAGGC TTTACTGCCC GCCTGGAATC GGGCTTCACC GAAGGCCCGG TAGGCGTCGG CGTGGATGCC ATGGGCCAGT TGGGCGTCAA GCTCGACAGC AGCCGTGACC GCCGCAACAC CGGCCTGCTG CCGTTTGGCC CGAACAGCCA CGAGCCTGTC GATGACTACA GTGAGTTGGG CCTGACCGGT AAAGTGCGCG TGTCCAAGAG CACCCTGCGC CTGGGCACCT TGCAGCCGAT TCTGCCGGTA GTGGTTTACA ACGACACGCG ACTGCTGGCG TCGACCTTCC AGGGCGGGCT GCTGACCAGC CAGGAACTCG ACGGCCTGAC CGTCAACGCC GGACGCTTGA CCAAGGCCAA CCTGCGCGAC TCTTCGGGCC GCGACGACAT CGGCTACGGC GCCGCCAGCA GCGACCATCT GGACTTCGGT GGCGGCAGCT ATGCCATTAC CCCACAGACC AGCGTCAGCT ACTACTACGC CAAGCTCGAA GACATCTACC GCCAGCAGTT TGTCGGCCTG GTCGACACCC GCCCGCTGGG CGAAGGCCTT AGCCTGCGTA GCGACCTGCG GTACTTCGAC AGCCGCAATG ATGGCGCCGA ACGTGCCGGC AACATCGACA ACCGCAACTT CAACGCCATG TTCACCCTCG GCGTCAGGGC ACACAAATTC ACCGCCACCT GGCAACAGAT GTCCGGTGAC AGCGCCTTCC CCTTCGTCAA CGGCGGCGAC CCGTTCACCG TGAACCTGGT GACCTACAAC ACCTTCACCC GTGCCGGGCT CGATTCGTGG CAGGTGCGCT ATGACTACGA TTTCGTTGCC ATGGGCATTC CCGGCCTGAG TTTCATGACC CGTTACACCG ACGGACGCCA CGCCGAGACC GCGACCGTCA GCAACGGCCG TGAGCGCGAG CGCGATAGCG ACCTCACCTA TGTCATCCAG AGCGGTCCGT TCAAAGACGT CAGCCTGCGC TGGCGCAATG TCACCTTCCG TTCCGGCAAT GGCCTGACCA ATGCCGTGGA CGAAAACCGC CTGATCATCG GCTACACCCT GGCGCTGTGG TAA
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Protein sequence | MNRTRFSCLT WLATLALPLP ALADFVGDSH ARLELRNHYL NRDFRQSNAP QAKAEEWGQG FTARLESGFT EGPVGVGVDA MGQLGVKLDS SRDRRNTGLL PFGPNSHEPV DDYSELGLTG KVRVSKSTLR LGTLQPILPV VVYNDTRLLA STFQGGLLTS QELDGLTVNA GRLTKANLRD SSGRDDIGYG AASSDHLDFG GGSYAITPQT SVSYYYAKLE DIYRQQFVGL VDTRPLGEGL SLRSDLRYFD SRNDGAERAG NIDNRNFNAM FTLGVRAHKF TATWQQMSGD SAFPFVNGGD PFTVNLVTYN TFTRAGLDSW QVRYDYDFVA MGIPGLSFMT RYTDGRHAET ATVSNGRERE RDSDLTYVIQ SGPFKDVSLR WRNVTFRSGN GLTNAVDENR LIIGYTLALW
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