Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1185 |
Symbol | |
ID | 6110109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 1313630 |
End bp | 1314910 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641620955 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_001748059 |
Protein GI | 170720371 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0078152 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.144434 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCGT TCATTCTGTT GGGCAGTTTC ATCGTGCTCA TCCTGATCGG TATGCCGGTG GCCTTCGCCC TGGGCCTGTC GGCGCTGATC GGCGCCTGGT GGATCGACAT TCCGCTGCAG GCGATGATGA TTCAGATCGC CAGTGGGGTT AACAAGTTTT CACTGCTGGC CATTCCGTTC TTCGTGCTGG CTGGCGCAAT CATGGCCGAA GGTGGCATGT CACGGCGGTT GGTGGCCTTC GCCGGGGTAC TGGTGGGCTT CGTACGGGGC GGGTTGTCGC TGGTCAATAT CATGGCCTCG ACCTTCTTCG GCGCCATTTC CGGCTCGTCG GTGGCTGACA CCGCGTCTGT AGGCTCGGTA CTGATCCCCG AGATGGAGCG CAAGGGCTAC CCGCGCGAGT TCTCCACGGC AGTGACCGTC AGCGGCTCGG TGCAGGCACT GCTCACACCA CCCAGCCACA ACTCGGTGCT GTACTCGCTG GCGGCGGGCG GCACAGTGTC GATCGGCTCG CTGTTCATTG CGGGGATCAT GCCCGGCTTG CTGCTGAGCG CGGTGATGAT GGGCCTGTGC CTGATTTTCG CCAAGAAACG CAACTACCCC AAAGGTGAAG TGATCCCGCT GCGTCAAGCG TTGAAGATCG CCGGCGAAGC ACTGTGGGGC CTGATGGCGA TGGTCATCAT CCTCGGCGGT ATTCTCTCGG GCGTGTTCAC CGCCACCGAG TCAGCTGCCG TGGCAGTGGT CTGGTCGTTC TTCGTGACCA TGTTCATTTA CCGTGACTAC AAGTGGCGGG ACCTGCCCAA GCTGATGCAC CGTACGGTAC GGACCATCTC GATCGTGATG ATCCTGATCG GCTTTGCCGC CAGCTTCGGC TACGTGATGA CGCTGATGCA GATCCCGTCG AAGATCACCA CAGTGTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT GATGTGCATC AACTTCATGC TGTTGCTGCT GGGCACGGTG ATGGACATGG CACCGCTGAT CCTGATCCTG ACGCCGATCC TGCTGCCAGT GATCACCGGC ATAGGTGTGG ACCCGGTGCA CTTCGGCATG ATCATGCTGG TGAACCTGGG TATCGGGTTG ATCACCCCAC CGGTGGGTGC GGTGCTGTTC GTCGGCTCGG CCATCGGCAA GGTGAGCATC GAATCGACGG TGAAGGCGCT GCTGCCGTTC TACCTGGCGC TGTTCCTGGT GCTCATTGCG GTCACCTACA TTCCGGCCAT CTCGCTGTGG CTGCCGAGCG TCGTGCTGTA A
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Protein sequence | MDAFILLGSF IVLILIGMPV AFALGLSALI GAWWIDIPLQ AMMIQIASGV NKFSLLAIPF FVLAGAIMAE GGMSRRLVAF AGVLVGFVRG GLSLVNIMAS TFFGAISGSS VADTASVGSV LIPEMERKGY PREFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIGS LFIAGIMPGL LLSAVMMGLC LIFAKKRNYP KGEVIPLRQA LKIAGEALWG LMAMVIILGG ILSGVFTATE SAAVAVVWSF FVTMFIYRDY KWRDLPKLMH RTVRTISIVM ILIGFAASFG YVMTLMQIPS KITTVFLTLS DNRYVILMCI NFMLLLLGTV MDMAPLILIL TPILLPVITG IGVDPVHFGM IMLVNLGIGL ITPPVGAVLF VGSAIGKVSI ESTVKALLPF YLALFLVLIA VTYIPAISLW LPSVVL
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