More than 300 homologs were found in PanDaTox collection
for query gene Rru_A3454 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A3454  binding-protein dependent transport system inner membrane protein  100 
 
 
298 aa  575  1.0000000000000001e-163  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0345  binding-protein-dependent transport systems inner membrane component  58.66 
 
 
297 aa  306  3e-82  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2045  binding-protein-dependent transport systems inner membrane component  58.66 
 
 
312 aa  304  1.0000000000000001e-81  Chelativorans sp. BNC1  Bacteria  normal  0.613322  n/a   
 
 
-
 
NC_011989  Avi_3459  ABC transporter  55.48 
 
 
288 aa  296  3e-79  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1814  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
287 aa  293  3e-78  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0476587  normal  0.305557 
 
 
-
 
NC_009428  Rsph17025_1464  binding-protein-dependent transport systems inner membrane component  55.71 
 
 
287 aa  292  6e-78  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0181  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  56.43 
 
 
311 aa  291  1e-77  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.121482  n/a   
 
 
-
 
NC_010725  Mpop_1082  binding-protein-dependent transport systems inner membrane component  57.6 
 
 
305 aa  285  5.999999999999999e-76  Methylobacterium populi BJ001  Bacteria  normal  0.779888  normal  0.0329883 
 
 
-
 
NC_009636  Smed_2371  binding-protein-dependent transport systems inner membrane component  54.77 
 
 
294 aa  284  1.0000000000000001e-75  Sinorhizobium medicae WSM419  Bacteria  normal  0.91742  normal  0.325627 
 
 
-
 
NC_009952  Dshi_1372  binding-protein-dependent transport systems inner membrane component  52.35 
 
 
305 aa  281  8.000000000000001e-75  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.856164  normal  0.860518 
 
 
-
 
NC_008044  TM1040_1495  binding-protein-dependent transport systems inner membrane component  55.76 
 
 
305 aa  279  3e-74  Ruegeria sp. TM1040  Bacteria  normal  0.473602  normal 
 
 
-
 
NC_010172  Mext_1732  binding-protein-dependent transport systems inner membrane component  58.55 
 
 
302 aa  279  4e-74  Methylobacterium extorquens PA1  Bacteria  normal  0.244285  normal 
 
 
-
 
NC_011757  Mchl_2051  binding-protein-dependent transport systems inner membrane component  58.55 
 
 
305 aa  275  7e-73  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.418777 
 
 
-
 
NC_007802  Jann_2701  binding-protein-dependent transport systems inner membrane component  53.96 
 
 
315 aa  270  2.9999999999999997e-71  Jannaschia sp. CCS1  Bacteria  normal  0.725502  normal  0.78823 
 
 
-
 
NC_011369  Rleg2_3041  binding-protein-dependent transport systems inner membrane component  47.76 
 
 
314 aa  267  2e-70  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.819345  normal 
 
 
-
 
NC_012880  Dd703_0036  binding-protein-dependent transport systems inner membrane component  51.06 
 
 
292 aa  265  5.999999999999999e-70  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3296  binding-protein-dependent transport systems inner membrane component  47.87 
 
 
309 aa  263  3e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.913784  normal  0.0841796 
 
 
-
 
NC_009485  BBta_6032  putative ABC transporter, permease protein  53.28 
 
 
285 aa  235  6e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2100  binding-protein-dependent transport systems inner membrane component  44.77 
 
 
275 aa  207  2e-52  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1884  binding-protein-dependent transport systems inner membrane component  42.58 
 
 
307 aa  195  7e-49  Meiothermus ruber DSM 1279  Bacteria  normal  0.665089  normal  0.160596 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  36.51 
 
 
268 aa  139  7.999999999999999e-32  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  35.4 
 
 
282 aa  124  1e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
306 aa  122  5e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
256 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  36.57 
 
 
257 aa  120  3e-26  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
265 aa  118  9.999999999999999e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  37.79 
 
 
249 aa  117  1.9999999999999998e-25  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
274 aa  117  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
258 aa  115  6.9999999999999995e-25  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
322 aa  114  2.0000000000000002e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  38.8 
 
 
273 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  42.77 
 
 
281 aa  114  2.0000000000000002e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
249 aa  113  3e-24  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  37.61 
 
 
266 aa  114  3e-24  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  37.16 
 
 
266 aa  112  5e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
253 aa  112  5e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  41.03 
 
 
273 aa  112  6e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
257 aa  112  6e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  35.71 
 
 
261 aa  110  2.0000000000000002e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
260 aa  111  2.0000000000000002e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
246 aa  110  3e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  33.96 
 
 
282 aa  110  3e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  34.51 
 
 
265 aa  107  3e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
257 aa  105  1e-21  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
362 aa  105  1e-21  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
254 aa  105  1e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  37.84 
 
 
258 aa  105  1e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  30.54 
 
 
250 aa  103  2e-21  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  30.54 
 
 
250 aa  104  2e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  37.65 
 
 
254 aa  104  2e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  30.54 
 
 
250 aa  103  2e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  30.54 
 
 
250 aa  104  2e-21  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
251 aa  104  2e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
250 aa  103  3e-21  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  30.54 
 
 
250 aa  103  3e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
254 aa  103  3e-21  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
283 aa  103  3e-21  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
256 aa  103  4e-21  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  30.13 
 
 
251 aa  102  6e-21  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  32.05 
 
 
257 aa  102  6e-21  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
266 aa  102  6e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_24180  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  37.06 
 
 
302 aa  102  6e-21  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
255 aa  102  7e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  29.96 
 
 
251 aa  102  7e-21  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  32.48 
 
 
255 aa  102  7e-21  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  32.05 
 
 
257 aa  101  1e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  30.13 
 
 
250 aa  102  1e-20  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  31.62 
 
 
265 aa  101  1e-20  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  31.62 
 
 
265 aa  101  1e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  31.88 
 
 
265 aa  102  1e-20  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  32.05 
 
 
257 aa  101  1e-20  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  33.67 
 
 
284 aa  102  1e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
260 aa  102  1e-20  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
258 aa  101  1e-20  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  32.05 
 
 
257 aa  101  1e-20  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  32.05 
 
 
257 aa  101  1e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  33.96 
 
 
279 aa  100  3e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  29.71 
 
 
250 aa  100  4e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
254 aa  100  4e-20  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
282 aa  99.4  6e-20  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
255 aa  99.4  7e-20  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
282 aa  99.4  7e-20  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
288 aa  99  9e-20  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  38 
 
 
250 aa  98.2  1e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  35 
 
 
253 aa  98.6  1e-19  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
253 aa  98.2  1e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  37.61 
 
 
272 aa  97.8  2e-19  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
250 aa  98.2  2e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
245 aa  97.8  2e-19  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
256 aa  97.4  2e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  34.4 
 
 
249 aa  97.1  3e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.51 
 
 
247 aa  96.3  5e-19  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  29.32 
 
 
251 aa  95.1  1e-18  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  26.03 
 
 
259 aa  95.1  1e-18  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
255 aa  95.5  1e-18  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  36.27 
 
 
277 aa  95.1  1e-18  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
268 aa  94  2e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
280 aa  94  3e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
303 aa  94  3e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  37.1 
 
 
286 aa  93.6  4e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
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